Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC22.03■■□□□ 1.12
HMGCS2P54868 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGCS2P54868 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGCS2P54868 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC22.03■■□□□ 1.12
HMGCS2P54868 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC22.03■■□□□ 1.12
HMGCS2P54868 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC22.03■■□□□ 1.12
HMGCS2P54868 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.03■■□□□ 1.12
HMGCS2P54868 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
HMGCS2P54868 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGCS2P54868 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
HMGCS2P54868 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC22.02■■□□□ 1.12
HMGCS2P54868 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC22.02■■□□□ 1.12
HMGCS2P54868 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
HMGCS2P54868 IRF5-214ENST00000613821 595 ntTSL 5 BASIC22.02■■□□□ 1.12
HMGCS2P54868 AL691432.3-201ENST00000621860 400 ntBASIC22.02■■□□□ 1.12
HMGCS2P54868 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC22.02■■□□□ 1.12
HMGCS2P54868 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC22.02■■□□□ 1.12
HMGCS2P54868 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC22.02■■□□□ 1.12
HMGCS2P54868 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 GAS2L1P1-201ENST00000420145 1480 ntBASIC22.02■■□□□ 1.12
HMGCS2P54868 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGCS2P54868 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HMGCS2P54868 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGCS2P54868 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HMGCS2P54868 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HMGCS2P54868 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC22.01■■□□□ 1.11
HMGCS2P54868 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
HMGCS2P54868 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGCS2P54868 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC22.01■■□□□ 1.11
HMGCS2P54868 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC22.01■■□□□ 1.11
HMGCS2P54868 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGCS2P54868 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
HMGCS2P54868 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC22.01■■□□□ 1.11
HMGCS2P54868 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGCS2P54868 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
HMGCS2P54868 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
HMGCS2P54868 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC22■■□□□ 1.11
HMGCS2P54868 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
HMGCS2P54868 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC22■■□□□ 1.11
HMGCS2P54868 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC22■■□□□ 1.11
HMGCS2P54868 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC22■■□□□ 1.11
HMGCS2P54868 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC22■■□□□ 1.11
HMGCS2P54868 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC22■■□□□ 1.11
HMGCS2P54868 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC22■■□□□ 1.11
HMGCS2P54868 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22■■□□□ 1.11
HMGCS2P54868 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
HMGCS2P54868 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC22■■□□□ 1.11
HMGCS2P54868 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGCS2P54868 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGCS2P54868 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGCS2P54868 AL157384.1-201ENST00000445995 2473 ntBASIC21.99■■□□□ 1.11
HMGCS2P54868 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.99■■□□□ 1.11
HMGCS2P54868 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGCS2P54868 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.99■■□□□ 1.11
HMGCS2P54868 MCCD1P1-208ENST00000445732 328 ntBASIC21.99■■□□□ 1.11
HMGCS2P54868 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGCS2P54868 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.99■■□□□ 1.11
HMGCS2P54868 MIR3180-5-201ENST00000583743 153 ntBASIC21.99■■□□□ 1.11
HMGCS2P54868 AC011498.5-201ENST00000592027 486 ntBASIC21.99■■□□□ 1.11
HMGCS2P54868 AC092329.2-201ENST00000598402 547 ntBASIC21.99■■□□□ 1.11
HMGCS2P54868 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.99■■□□□ 1.11
HMGCS2P54868 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGCS2P54868 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGCS2P54868 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGCS2P54868 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGCS2P54868 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.98■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms