Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
COL8A1P27658 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.65■□□□□ 0.26
COL8A1P27658 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL8A1P27658 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.65■□□□□ 0.26
COL8A1P27658 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 FAM220CP-201ENST00000395253 831 ntBASIC16.65■□□□□ 0.26
COL8A1P27658 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.65■□□□□ 0.26
COL8A1P27658 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.65■□□□□ 0.26
COL8A1P27658 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
COL8A1P27658 MIR4674-201ENST00000582457 87 ntBASIC16.65■□□□□ 0.26
COL8A1P27658 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL8A1P27658 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.65■□□□□ 0.26
COL8A1P27658 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.65■□□□□ 0.26
COL8A1P27658 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
COL8A1P27658 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL8A1P27658 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.65■□□□□ 0.26
COL8A1P27658 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL8A1P27658 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
COL8A1P27658 AL162741.1-201ENST00000565563 1558 ntBASIC16.64■□□□□ 0.25
COL8A1P27658 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 SLC25A24-204ENST00000569674 2357 ntBASIC16.64■□□□□ 0.25
COL8A1P27658 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.64■□□□□ 0.25
COL8A1P27658 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
COL8A1P27658 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.64■□□□□ 0.25
COL8A1P27658 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.64■□□□□ 0.25
COL8A1P27658 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL8A1P27658 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.64■□□□□ 0.25
COL8A1P27658 TOB2P1-201ENST00000469761 992 ntBASIC16.64■□□□□ 0.25
COL8A1P27658 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.64■□□□□ 0.25
COL8A1P27658 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.64■□□□□ 0.25
COL8A1P27658 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.64■□□□□ 0.25
COL8A1P27658 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
COL8A1P27658 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL8A1P27658 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
COL8A1P27658 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 KRT8P41-201ENST00000533985 1514 ntBASIC16.64■□□□□ 0.25
COL8A1P27658 IL9RP2-201ENST00000423948 1312 ntBASIC16.64■□□□□ 0.25
COL8A1P27658 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL8A1P27658 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COL8A1P27658 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COL8A1P27658 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.63■□□□□ 0.25
COL8A1P27658 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COL8A1P27658 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.63■□□□□ 0.25
COL8A1P27658 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
COL8A1P27658 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.63■□□□□ 0.25
COL8A1P27658 AC034232.1-201ENST00000506026 1064 ntBASIC16.63■□□□□ 0.25
COL8A1P27658 POLD2P1-201ENST00000511220 997 ntBASIC16.63■□□□□ 0.25
COL8A1P27658 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.63■□□□□ 0.25
COL8A1P27658 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.63■□□□□ 0.25
COL8A1P27658 AC024243.1-201ENST00000609234 778 ntBASIC16.63■□□□□ 0.25
COL8A1P27658 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.63■□□□□ 0.25
COL8A1P27658 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
COL8A1P27658 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.63■□□□□ 0.25
COL8A1P27658 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL8A1P27658 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
COL8A1P27658 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.62■□□□□ 0.25
COL8A1P27658 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms