Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
USF1P22415 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.15■□□□□ 0.18
USF1P22415 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.15■□□□□ 0.18
USF1P22415 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.15■□□□□ 0.18
USF1P22415 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 TSPY17P-201ENST00000450329 467 ntBASIC16.15■□□□□ 0.18
USF1P22415 AC092647.4-201ENST00000457211 535 ntBASIC16.15■□□□□ 0.18
USF1P22415 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.15■□□□□ 0.18
USF1P22415 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.15■□□□□ 0.18
USF1P22415 AL512604.3-201ENST00000569583 964 ntBASIC16.15■□□□□ 0.18
USF1P22415 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.15■□□□□ 0.18
USF1P22415 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
USF1P22415 AC139887.4-201ENST00000607877 719 ntBASIC16.15■□□□□ 0.18
USF1P22415 AL138966.2-201ENST00000621997 464 ntBASIC16.15■□□□□ 0.18
USF1P22415 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.15■□□□□ 0.18
USF1P22415 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
USF1P22415 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.15■□□□□ 0.18
USF1P22415 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
USF1P22415 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
USF1P22415 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.14■□□□□ 0.18
USF1P22415 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.14■□□□□ 0.18
USF1P22415 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
USF1P22415 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
USF1P22415 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.14■□□□□ 0.17
USF1P22415 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
USF1P22415 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 AC007663.1-201ENST00000438948 1240 ntBASIC16.14■□□□□ 0.17
USF1P22415 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.14■□□□□ 0.17
USF1P22415 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 COX11P1-201ENST00000489116 835 ntBASIC16.14■□□□□ 0.17
USF1P22415 Z85996.1-201ENST00000494644 937 ntBASIC16.14■□□□□ 0.17
USF1P22415 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 AL160286.2-201ENST00000567150 934 ntBASIC16.14■□□□□ 0.17
USF1P22415 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.14■□□□□ 0.17
USF1P22415 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
USF1P22415 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
USF1P22415 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.14■□□□□ 0.17
USF1P22415 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.14■□□□□ 0.17
USF1P22415 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16.14■□□□□ 0.17
USF1P22415 AFG3L1P-217ENST00000557444 2447 ntBASIC16.14■□□□□ 0.17
USF1P22415 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
USF1P22415 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
USF1P22415 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
USF1P22415 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
USF1P22415 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.13■□□□□ 0.17
USF1P22415 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 FAM8A6P-201ENST00000407496 1135 ntBASIC16.13■□□□□ 0.17
USF1P22415 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.13■□□□□ 0.17
USF1P22415 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.13■□□□□ 0.17
USF1P22415 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
USF1P22415 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
USF1P22415 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.13■□□□□ 0.17
USF1P22415 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.13■□□□□ 0.17
USF1P22415 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.13■□□□□ 0.17
USF1P22415 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.13■□□□□ 0.17
USF1P22415 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
USF1P22415 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
USF1P22415 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.13■□□□□ 0.17
USF1P22415 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.13■□□□□ 0.17
USF1P22415 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 AP001271.2-201ENST00000624018 1556 ntBASIC16.13■□□□□ 0.17
USF1P22415 BX119927.1-201ENST00000636596 1552 ntBASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms