Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
HMGB1P09429 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB1P09429 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB1P09429 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB1P09429 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB1P09429 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC22.52■■□□□ 1.2
HMGB1P09429 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB1P09429 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB1P09429 AP001412.1-201ENST00000608405 714 ntBASIC22.52■■□□□ 1.2
HMGB1P09429 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC22.52■■□□□ 1.2
HMGB1P09429 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC22.52■■□□□ 1.2
HMGB1P09429 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB1P09429 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC22.52■■□□□ 1.2
HMGB1P09429 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC22.52■■□□□ 1.2
HMGB1P09429 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB1P09429 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC22.52■■□□□ 1.2
HMGB1P09429 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC22.51■■□□□ 1.19
HMGB1P09429 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 CROCCP3-202ENST00000420820 1947 ntBASIC22.51■■□□□ 1.19
HMGB1P09429 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC22.51■■□□□ 1.19
HMGB1P09429 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC22.51■■□□□ 1.19
HMGB1P09429 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
HMGB1P09429 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC22.51■■□□□ 1.19
HMGB1P09429 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
HMGB1P09429 AC130371.2-201ENST00000619443 611 ntBASIC22.51■■□□□ 1.19
HMGB1P09429 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
HMGB1P09429 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
HMGB1P09429 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB1P09429 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB1P09429 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB1P09429 AC093503.3-201ENST00000624917 2352 ntBASIC22.5■■□□□ 1.19
HMGB1P09429 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB1P09429 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB1P09429 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
HMGB1P09429 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
HMGB1P09429 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB1P09429 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC22.5■■□□□ 1.19
HMGB1P09429 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC22.5■■□□□ 1.19
HMGB1P09429 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
HMGB1P09429 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
HMGB1P09429 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC22.5■■□□□ 1.19
HMGB1P09429 RPS2P55-201ENST00000397318 883 ntBASIC22.5■■□□□ 1.19
HMGB1P09429 AC012618.2-201ENST00000428058 849 ntBASIC22.5■■□□□ 1.19
HMGB1P09429 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC22.5■■□□□ 1.19
HMGB1P09429 AC107956.1-201ENST00000494359 873 ntBASIC22.5■■□□□ 1.19
HMGB1P09429 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC22.5■■□□□ 1.19
HMGB1P09429 CD177P1-201ENST00000606252 935 ntBASIC22.5■■□□□ 1.19
HMGB1P09429 AC011298.2-201ENST00000617989 482 ntBASIC22.5■■□□□ 1.19
HMGB1P09429 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB1P09429 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB1P09429 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB1P09429 SRI-203ENST00000419179 1307 ntTSL 2 BASIC22.5■■□□□ 1.19
HMGB1P09429 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC22.5■■□□□ 1.19
HMGB1P09429 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
HMGB1P09429 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 FSCN1P1-201ENST00000568912 1481 ntBASIC22.49■■□□□ 1.19
HMGB1P09429 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC22.49■■□□□ 1.19
HMGB1P09429 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC22.49■■□□□ 1.19
HMGB1P09429 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC22.49■■□□□ 1.19
HMGB1P09429 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC22.49■■□□□ 1.19
HMGB1P09429 MIR6786-201ENST00000616843 113 ntBASIC22.49■■□□□ 1.19
HMGB1P09429 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC22.49■■□□□ 1.19
HMGB1P09429 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
HMGB1P09429 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
HMGB1P09429 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
HMGB1P09429 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 AIRN-201ENST00000601203 4374 ntBASIC22.49■■□□□ 1.19
HMGB1P09429 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC22.49■■□□□ 1.19
HMGB1P09429 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
HMGB1P09429 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HMGB1P09429 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGB1P09429 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC22.48■■□□□ 1.19
HMGB1P09429 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
HMGB1P09429 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGB1P09429 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC22.48■■□□□ 1.19
HMGB1P09429 AC004408.2-201ENST00000623613 2777 ntBASIC22.48■■□□□ 1.19
HMGB1P09429 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC22.48■■□□□ 1.19
HMGB1P09429 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HMGB1P09429 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGB1P09429 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
HMGB1P09429 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.48■■□□□ 1.19
HMGB1P09429 FAM197Y1-201ENST00000421178 764 ntBASIC22.48■■□□□ 1.19
HMGB1P09429 B3GAT3P1-201ENST00000471720 806 ntBASIC22.48■■□□□ 1.19
HMGB1P09429 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms