Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC11O43248 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HOXC11O43248 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC11O43248 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.43■□□□□ 0.7
HOXC11O43248 TREX1-205ENST00000625293 1783 ntBASIC19.43■□□□□ 0.7
HOXC11O43248 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.43■□□□□ 0.7
HOXC11O43248 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 GCSHP2-201ENST00000560971 527 ntBASIC19.43■□□□□ 0.7
HOXC11O43248 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXC11O43248 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC11O43248 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC11O43248 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
HOXC11O43248 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC11O43248 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC11O43248 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC11O43248 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC11O43248 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.42■□□□□ 0.7
HOXC11O43248 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC11O43248 STARP1-201ENST00000397973 869 ntBASIC19.42■□□□□ 0.7
HOXC11O43248 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC11O43248 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXC11O43248 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXC11O43248 GPAT2P1-201ENST00000444924 1672 ntBASIC19.42■□□□□ 0.7
HOXC11O43248 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
HOXC11O43248 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC11O43248 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXC11O43248 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HOXC11O43248 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXC11O43248 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HOXC11O43248 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXC11O43248 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC11O43248 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC11O43248 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC11O43248 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXC11O43248 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC11O43248 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
HOXC11O43248 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXC11O43248 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC11O43248 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC11O43248 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HOXC11O43248 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC11O43248 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC11O43248 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC11O43248 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC11O43248 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC11O43248 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC11O43248 KRT8P3-201ENST00000519669 1449 ntBASIC19.41■□□□□ 0.7
HOXC11O43248 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
HOXC11O43248 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC11O43248 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC11O43248 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC11O43248 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HOXC11O43248 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC11O43248 AL023284.2-201ENST00000405850 579 ntBASIC19.4■□□□□ 0.7
HOXC11O43248 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC11O43248 PCED1CP-201ENST00000419887 785 ntBASIC19.4■□□□□ 0.7
HOXC11O43248 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC11O43248 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC11O43248 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC11O43248 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC11O43248 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC11O43248 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC11O43248 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC11O43248 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC11O43248 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC11O43248 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC11O43248 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC11O43248 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC11O43248 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC11O43248 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC11O43248 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC11O43248 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC11O43248 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
HOXC11O43248 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HOXC11O43248 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
HOXC11O43248 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms