Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
CLDN3O15551 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.85■□□□□ 0.93
CLDN3O15551 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.85■□□□□ 0.93
CLDN3O15551 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.85■□□□□ 0.93
CLDN3O15551 LINC01023-201ENST00000606054 436 ntBASIC20.85■□□□□ 0.93
CLDN3O15551 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
CLDN3O15551 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.85■□□□□ 0.93
CLDN3O15551 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.85■□□□□ 0.93
CLDN3O15551 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.84■□□□□ 0.93
CLDN3O15551 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 ECEL1P3-201ENST00000427961 737 ntBASIC20.84■□□□□ 0.93
CLDN3O15551 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.84■□□□□ 0.93
CLDN3O15551 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CLDN3O15551 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.84■□□□□ 0.93
CLDN3O15551 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
CLDN3O15551 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.84■□□□□ 0.93
CLDN3O15551 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.84■□□□□ 0.93
CLDN3O15551 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CLDN3O15551 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.84■□□□□ 0.93
CLDN3O15551 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN3O15551 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN3O15551 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.83■□□□□ 0.93
CLDN3O15551 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.83■□□□□ 0.93
CLDN3O15551 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.83■□□□□ 0.93
CLDN3O15551 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.83■□□□□ 0.93
CLDN3O15551 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CLDN3O15551 AC012306.2-201ENST00000609350 630 ntBASIC20.83■□□□□ 0.93
CLDN3O15551 AC097493.4-201ENST00000641197 219 ntBASIC20.83■□□□□ 0.93
CLDN3O15551 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN3O15551 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.83■□□□□ 0.92
CLDN3O15551 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN3O15551 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
CLDN3O15551 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN3O15551 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN3O15551 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN3O15551 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN3O15551 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN3O15551 LINC01568-207ENST00000641790 1380 ntBASIC20.83■□□□□ 0.92
CLDN3O15551 TEX21P-204ENST00000641479 1693 ntBASIC20.83■□□□□ 0.92
CLDN3O15551 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN3O15551 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.83■□□□□ 0.92
CLDN3O15551 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.83■□□□□ 0.92
CLDN3O15551 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.82■□□□□ 0.92
CLDN3O15551 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN3O15551 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.82■□□□□ 0.92
CLDN3O15551 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CLDN3O15551 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN3O15551 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN3O15551 TSPY14P-201ENST00000303979 915 ntBASIC20.82■□□□□ 0.92
CLDN3O15551 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN3O15551 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.82■□□□□ 0.92
CLDN3O15551 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.82■□□□□ 0.92
CLDN3O15551 EGLN1P1-201ENST00000531623 762 ntBASIC20.82■□□□□ 0.92
CLDN3O15551 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN3O15551 AC145285.6-201ENST00000604632 637 ntBASIC20.82■□□□□ 0.92
CLDN3O15551 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN3O15551 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.82■□□□□ 0.92
CLDN3O15551 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN3O15551 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.82■□□□□ 0.92
CLDN3O15551 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN3O15551 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN3O15551 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.81■□□□□ 0.92
CLDN3O15551 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
CLDN3O15551 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.81■□□□□ 0.92
CLDN3O15551 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.81■□□□□ 0.92
CLDN3O15551 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.81■□□□□ 0.92
CLDN3O15551 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.81■□□□□ 0.92
CLDN3O15551 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.81■□□□□ 0.92
CLDN3O15551 CA15P1-201ENST00000481698 905 ntBASIC20.81■□□□□ 0.92
CLDN3O15551 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.81■□□□□ 0.92
CLDN3O15551 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.81■□□□□ 0.92
CLDN3O15551 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.81■□□□□ 0.92
CLDN3O15551 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.81■□□□□ 0.92
CLDN3O15551 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms