Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 FEM1AP1-201ENST00000431297 1995 ntBASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 RPL13AP23-201ENST00000480739 586 ntBASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 AL691403.2-201ENST00000618460 490 ntBASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A6A6NMZ7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 IGHV3-47-201ENST00000425060 335 ntBASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 AC099336.1-202ENST00000602961 463 ntBASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 AC148477.8-201ENST00000624298 468 ntBASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 AL157888.1-201ENST00000631930 593 ntBASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 FEM1AP4-201ENST00000443167 1987 ntBASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 AC098831.1-202ENST00000438821 336 ntBASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 AC139887.3-201ENST00000568585 713 ntBASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
COL6A6A6NMZ7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms