Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AC005363.2-201ENST00000618631 242 ntBASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AC104417.2-201ENST00000562989 1793 ntBASIC25.72■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ZNF815P-204ENST00000434898 1737 ntBASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AC018445.3-201ENST00000624177 1945 ntBASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AC124016.1-201ENST00000609552 612 ntBASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AL161938.1-201ENST00000569833 2180 ntBASIC25.71■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC25.7■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC005521.1-201ENST00000393351 872 ntBASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC239809.2-201ENST00000415381 517 ntBASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 YBX1P10-201ENST00000444752 975 ntBASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 KRT18P16-201ENST00000510337 1294 ntBASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AL353708.3-201ENST00000610272 989 ntBASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms