Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-923P-201ENST00000364753 107 ntBASIC4.96□□□□□ -1.62
MSX1P28360 Y_RNA.441-201ENST00000384123 112 ntBASIC4.96□□□□□ -1.62
MSX1P28360 RNU6-514P-201ENST00000384208 107 ntBASIC4.96□□□□□ -1.62
MSX1P28360 RNU6-417P-201ENST00000384712 107 ntBASIC4.96□□□□□ -1.62
MSX1P28360 RNU6-837P-201ENST00000391056 108 ntBASIC4.96□□□□□ -1.62
MSX1P28360 RNU4-30P-201ENST00000410245 143 ntBASIC4.96□□□□□ -1.62
MSX1P28360 RNU5A-5P-201ENST00000411054 116 ntBASIC4.96□□□□□ -1.62
MSX1P28360 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.96□□□□□ -1.62
MSX1P28360 RPS6P12-201ENST00000432491 726 ntBASIC4.96□□□□□ -1.62
MSX1P28360 CYCSP6-201ENST00000434498 302 ntBASIC4.96□□□□□ -1.62
MSX1P28360 RPL12P3-201ENST00000440080 396 ntBASIC4.96□□□□□ -1.62
MSX1P28360 AL589765.3-201ENST00000446084 462 ntBASIC4.96□□□□□ -1.62
MSX1P28360 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.96□□□□□ -1.62
MSX1P28360 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.96□□□□□ -1.62
MSX1P28360 RN7SL222P-201ENST00000476452 299 ntBASIC4.96□□□□□ -1.62
MSX1P28360 AC023424.1-201ENST00000496058 459 ntBASIC4.96□□□□□ -1.62
MSX1P28360 RNU6-377P-201ENST00000515965 102 ntBASIC4.96□□□□□ -1.62
MSX1P28360 RNU6-1219P-201ENST00000516143 112 ntBASIC4.96□□□□□ -1.62
MSX1P28360 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX1P28360 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.96□□□□□ -1.62
MSX1P28360 AC234771.5-201ENST00000600161 514 ntBASIC4.96□□□□□ -1.62
MSX1P28360 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.96□□□□□ -1.62
MSX1P28360 AC109583.2-201ENST00000617367 129 ntBASIC4.96□□□□□ -1.62
MSX1P28360 AC008785.1-201ENST00000624475 456 ntBASIC4.96□□□□□ -1.62
MSX1P28360 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX1P28360 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX1P28360 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSX1P28360 PCAT14-202ENST00000627127 3935 ntBASIC4.96□□□□□ -1.62
MSX1P28360 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX1P28360 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
MSX1P28360 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX1P28360 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
MSX1P28360 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX1P28360 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSX1P28360 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX1P28360 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX1P28360 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
MSX1P28360 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSX1P28360 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
MSX1P28360 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
MSX1P28360 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSX1P28360 SNORA70E-201ENST00000384492 135 ntBASIC4.95□□□□□ -1.62
MSX1P28360 MIR10A-201ENST00000385043 110 ntBASIC4.95□□□□□ -1.62
MSX1P28360 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC4.95□□□□□ -1.62
MSX1P28360 SRSF1P1-201ENST00000424058 520 ntBASIC4.95□□□□□ -1.62
MSX1P28360 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX1P28360 GAPDHP25-201ENST00000447061 1001 ntBASIC4.95□□□□□ -1.62
MSX1P28360 AC092754.1-201ENST00000472975 479 ntBASIC4.95□□□□□ -1.62
MSX1P28360 RPL7AP6-201ENST00000477943 801 ntBASIC4.95□□□□□ -1.62
MSX1P28360 RPSAP50-201ENST00000481955 852 ntBASIC4.95□□□□□ -1.62
MSX1P28360 AC074133.1-201ENST00000515696 183 ntBASIC4.95□□□□□ -1.62
MSX1P28360 RN7SKP272-201ENST00000516988 232 ntBASIC4.95□□□□□ -1.62
MSX1P28360 ATP5F1P5-201ENST00000526403 760 ntBASIC4.95□□□□□ -1.62
MSX1P28360 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC4.95□□□□□ -1.62
MSX1P28360 AK6P2-201ENST00000549020 471 ntBASIC4.95□□□□□ -1.62
MSX1P28360 RN7SL356P-201ENST00000582228 248 ntBASIC4.95□□□□□ -1.62
MSX1P28360 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSX1P28360 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
MSX1P28360 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX1P28360 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSX1P28360 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
MSX1P28360 ABCC13-202ENST00000463099 3842 ntBASIC4.95□□□□□ -1.62
MSX1P28360 RBBP8P1-201ENST00000449447 1844 ntBASIC4.95□□□□□ -1.62
MSX1P28360 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.95□□□□□ -1.62
MSX1P28360 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
MSX1P28360 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
MSX1P28360 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX1P28360 SDAD1P2-201ENST00000441308 2028 ntBASIC4.94□□□□□ -1.62
MSX1P28360 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX1P28360 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
MSX1P28360 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.94□□□□□ -1.62
MSX1P28360 UBE2WP1-201ENST00000362030 340 ntBASIC4.94□□□□□ -1.62
MSX1P28360 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.94□□□□□ -1.62
MSX1P28360 RNU6-318P-201ENST00000384283 103 ntBASIC4.94□□□□□ -1.62
MSX1P28360 RNU6-21P-201ENST00000384710 107 ntBASIC4.94□□□□□ -1.62
MSX1P28360 MIR765-201ENST00000390226 114 ntBASIC4.94□□□□□ -1.62
MSX1P28360 RNU1-77P-201ENST00000390868 162 ntBASIC4.94□□□□□ -1.62
MSX1P28360 HSPA8P15-201ENST00000401676 786 ntBASIC4.94□□□□□ -1.62
MSX1P28360 DUTP5-201ENST00000406790 469 ntBASIC4.94□□□□□ -1.62
MSX1P28360 RNA5SP487-201ENST00000410186 122 ntBASIC4.94□□□□□ -1.62
MSX1P28360 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.94□□□□□ -1.62
MSX1P28360 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX1P28360 GSTM5P1-201ENST00000434751 660 ntBASIC4.94□□□□□ -1.62
MSX1P28360 AL359073.1-201ENST00000448036 403 ntBASIC4.94□□□□□ -1.62
MSX1P28360 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.94□□□□□ -1.62
MSX1P28360 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX1P28360 RN7SL808P-201ENST00000496066 299 ntBASIC4.94□□□□□ -1.62
MSX1P28360 HMGB3P16-201ENST00000508037 287 ntBASIC4.94□□□□□ -1.62
MSX1P28360 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX1P28360 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.94□□□□□ -1.62
MSX1P28360 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX1P28360 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX1P28360 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.94□□□□□ -1.62
MSX1P28360 RN7SL708P-201ENST00000580952 299 ntBASIC4.94□□□□□ -1.62
MSX1P28360 AC067852.4-201ENST00000590314 478 ntBASIC4.94□□□□□ -1.62
MSX1P28360 AL645944.1-201ENST00000603857 493 ntBASIC4.94□□□□□ -1.62
MSX1P28360 AC000068.2-201ENST00000608816 460 ntBASIC4.94□□□□□ -1.62
MSX1P28360 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX1P28360 Mico1.1-201ENST00000611698 204 ntBASIC4.94□□□□□ -1.62
MSX1P28360 MTND1P7-201ENST00000632801 297 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms