Protein–RNA interactions for Protein: A6NED2

RCCD1, RCC1 domain-containing protein 1, humanhuman

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RCCD1A6NED2 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
RCCD1A6NED2 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
RCCD1A6NED2 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
RCCD1A6NED2 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
RCCD1A6NED2 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
RCCD1A6NED2 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 AC100821.1-201ENST00000523153 2479 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
RCCD1A6NED2 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RCCD1A6NED2 RNU6-653P-201ENST00000363074 106 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 RNU6-173P-201ENST00000364215 104 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 RNU6-178P-201ENST00000384631 104 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RCCD1A6NED2 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 AL035461.1-201ENST00000421490 332 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 TRAPPC2P4-201ENST00000421750 331 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 AC113412.1-201ENST00000425840 504 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 WARS2P1-201ENST00000429678 537 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 CYCSP32-201ENST00000440548 321 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 BTF3P6-201ENST00000448054 499 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 AC005840.1-201ENST00000498412 377 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 RNU4ATAC15P-201ENST00000516415 126 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 RNU6-426P-201ENST00000516464 97 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 RNA5SP290-201ENST00000517133 127 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 AC027309.3-201ENST00000623419 351 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 SCARNA4-202ENST00000625402 129 ntBASIC5.72□□□□□ -1.49
RCCD1A6NED2 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RCCD1A6NED2 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RCCD1A6NED2 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RCCD1A6NED2 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RCCD1A6NED2 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
RCCD1A6NED2 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RCCD1A6NED2 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
RCCD1A6NED2 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.49
RCCD1A6NED2 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
RCCD1A6NED2 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
RCCD1A6NED2 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
RCCD1A6NED2 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
RCCD1A6NED2 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.71□□□□□ -1.5
RCCD1A6NED2 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RCCD1A6NED2 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
RCCD1A6NED2 DEFB108F-201ENST00000344638 222 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.71□□□□□ -1.5
RCCD1A6NED2 RNU6-105P-201ENST00000363909 104 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 MIR186-201ENST00000384988 86 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 RPS3AP2-201ENST00000407190 754 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 RNU6-257P-201ENST00000410238 98 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 COX6B1P7-201ENST00000430845 235 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC5.71□□□□□ -1.5
RCCD1A6NED2 NUTF2P7-201ENST00000453086 375 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 snoU109.2-201ENST00000459316 135 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 AC092754.1-201ENST00000472975 479 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 AC010409.1-201ENST00000487382 476 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 SCARNA15.2-201ENST00000516409 127 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 SNORD116-25-201ENST00000516517 92 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 RNU6-572P-201ENST00000516724 80 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 SNORA43.3-201ENST00000517240 103 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.71□□□□□ -1.5
RCCD1A6NED2 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RCCD1A6NED2 MIR3684-201ENST00000579779 74 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 RN7SL356P-201ENST00000582228 248 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.71□□□□□ -1.5
RCCD1A6NED2 AC131238.1-201ENST00000617135 328 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.71□□□□□ -1.5
RCCD1A6NED2 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
RCCD1A6NED2 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
RCCD1A6NED2 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
RCCD1A6NED2 AC005332.5-201ENST00000591222 2919 ntBASIC5.71□□□□□ -1.5
RCCD1A6NED2 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RCCD1A6NED2 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.7□□□□□ -1.5
RCCD1A6NED2 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
RCCD1A6NED2 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
RCCD1A6NED2 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
RCCD1A6NED2 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
RCCD1A6NED2 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
RCCD1A6NED2 MIR375-201ENST00000362103 64 ntBASIC5.7□□□□□ -1.5
RCCD1A6NED2 Y_RNA.23-201ENST00000362496 106 ntBASIC5.7□□□□□ -1.5
RCCD1A6NED2 RNA5SP197-201ENST00000363357 119 ntBASIC5.7□□□□□ -1.5
RCCD1A6NED2 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC5.7□□□□□ -1.5
RCCD1A6NED2 RNU6-44P-201ENST00000384045 107 ntBASIC5.7□□□□□ -1.5
RCCD1A6NED2 MIR153-1-201ENST00000384914 90 ntBASIC5.7□□□□□ -1.5
RCCD1A6NED2 MIR551A-201ENST00000385042 96 ntBASIC5.7□□□□□ -1.5
RCCD1A6NED2 NME1P1-201ENST00000420914 382 ntBASIC5.7□□□□□ -1.5
RCCD1A6NED2 AL133173.1-201ENST00000423458 397 ntBASIC5.7□□□□□ -1.5
RCCD1A6NED2 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.7□□□□□ -1.5
RCCD1A6NED2 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.7□□□□□ -1.5
RCCD1A6NED2 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC5.7□□□□□ -1.5
RCCD1A6NED2 ANP32BP2-201ENST00000454525 545 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms