| HES3 | Q5TGS1 | AC005498.1-201 | ENST00000592125 | 465 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | VN1R87P-201 | ENST00000596706 | 487 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | BNIP3P8-201 | ENST00000597863 | 560 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL160237.3-201 | ENST00000604114 | 1013 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | ANKRD36C-207 | ENST00000612359 | 650 nt | TSL 1 (best) BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | SCARNA17.4-201 | ENST00000614296 | 143 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC079597.1-201 | ENST00000624306 | 508 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | SATB1-AS1-243 | ENST00000627546 | 589 nt | TSL 5 BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AP003399.1-201 | ENST00000637534 | 361 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | MKKS-204 | ENST00000639674 | 192 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC005539.1-201 | ENST00000443768 | 1479 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | STAU2-225 | ENST00000523558 | 1603 nt | TSL 2 BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | IL33-201 | ENST00000381434 | 2641 nt | APPRIS P1 TSL 1 (best) BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | SCN7A-201 | ENST00000409855 | 7183 nt | APPRIS P1 TSL 1 (best) BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | ZNF271P-202 | ENST00000465539 | 1970 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | USP53-202 | ENST00000450251 | 6072 nt | APPRIS P1 TSL 5 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL049641.1-201 | ENST00000441055 | 1948 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | RNU6-236P-201 | ENST00000363886 | 106 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | Y_RNA.226-201 | ENST00000364337 | 114 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | TAS2R15P-201 | ENST00000390674 | 928 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC062039.1-201 | ENST00000414394 | 565 nt | TSL 2 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | Z85995.1-201 | ENST00000415547 | 335 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL445123.1-201 | ENST00000422023 | 446 nt | TSL 2 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC098614.2-201 | ENST00000426040 | 255 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC108667.1-201 | ENST00000428618 | 249 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL590233.1-201 | ENST00000430017 | 456 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL512844.2-201 | ENST00000433990 | 593 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL359853.2-201 | ENST00000442108 | 353 nt | TSL 2 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | MTCYBP3-201 | ENST00000445588 | 1137 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL096829.2-201 | ENST00000446582 | 742 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | RPL39P6-201 | ENST00000448289 | 150 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC090453.1-201 | ENST00000495560 | 436 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | RPS27P27-201 | ENST00000498779 | 255 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | LINC02276-201 | ENST00000508388 | 138 nt | TSL 3 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | LINC02144-201 | ENST00000511417 | 592 nt | TSL 4 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | RNU1-104P-201 | ENST00000517280 | 175 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | ZNF436-AS1-205 | ENST00000518600 | 376 nt | TSL 5 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC087808.1-201 | ENST00000520501 | 361 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | MAL2-206 | ENST00000522187 | 547 nt | TSL 4 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC010175.1-201 | ENST00000538219 | 224 nt | TSL 5 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | MRPL42-203 | ENST00000547098 | 701 nt | TSL 3 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL133372.3-201 | ENST00000553082 | 821 nt | TSL 3 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | LINC02329-201 | ENST00000554753 | 511 nt | TSL 5 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC114546.1-201 | ENST00000560140 | 473 nt | TSL 3 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | LINC01584-203 | ENST00000567231 | 646 nt | TSL 5 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC103810.1-201 | ENST00000579873 | 453 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | MIR4637-201 | ENST00000582405 | 84 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC060766.3-201 | ENST00000591442 | 263 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC004853.1-201 | ENST00000604902 | 698 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL590426.2-201 | ENST00000607287 | 786 nt | TSL 3 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL592148.2-201 | ENST00000612210 | 372 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AL596245.1-201 | ENST00000618994 | 362 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | UCA1.1-201 | ENST00000620952 | 75 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | DLG2-AS1_1.1-201 | ENST00000622319 | 213 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | C3orf79-201 | ENST00000623038 | 580 nt | TSL 1 (best) BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | OR8K3-202 | ENST00000623845 | 939 nt | APPRIS P1 BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | ZNF355P-201 | ENST00000427301 | 3216 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AP005901.5-201 | ENST00000545779 | 1796 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | CSNK1G3-202 | ENST00000360683 | 4047 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | MIER3-204 | ENST00000381226 | 5210 nt | APPRIS ALT1 TSL 1 (best) BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | AC007336.1-201 | ENST00000576365 | 3828 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| HES3 | Q5TGS1 | ZGRF1-212 | ENST00000612287 | 2176 nt | TSL 1 (best) BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | TSLP-202 | ENST00000379706 | 2411 nt | TSL 1 (best) BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | PTPRQ-209 | ENST00000616559 | 8165 nt | TSL 5 BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | SNORA67.1-201 | ENST00000364749 | 141 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AKR1C1-201 | ENST00000380859 | 858 nt | TSL 3 BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | SNORA40.18-201 | ENST00000391200 | 128 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC007742.1-201 | ENST00000425789 | 329 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | ELOCP26-201 | ENST00000436067 | 329 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | UBE2V1P13-201 | ENST00000436983 | 439 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | BMI1P1-201 | ENST00000445879 | 941 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC009961.3-201 | ENST00000449832 | 765 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AL118520.1-201 | ENST00000450770 | 291 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC023424.2-201 | ENST00000493479 | 777 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC135721.1-201 | ENST00000497954 | 479 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | RPL23AP63-201 | ENST00000498752 | 471 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC147055.4-201 | ENST00000504399 | 745 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | COL6A4P2-205 | ENST00000509855 | 506 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | RNU6-334P-201 | ENST00000517072 | 102 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC060765.1-201 | ENST00000522776 | 544 nt | TSL 4 BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC093025.1-201 | ENST00000547795 | 569 nt | TSL 2 BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC124947.2-202 | ENST00000552735 | 133 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC110588.1-201 | ENST00000559699 | 137 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC090888.1-201 | ENST00000561335 | 1141 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | MYL12BP1-201 | ENST00000569826 | 507 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | OR1M4P-201 | ENST00000589199 | 287 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC013553.2-201 | ENST00000604244 | 589 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AL354810.1-201 | ENST00000618134 | 635 nt | TSL 3 BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AC010975.3-201 | ENST00000618727 | 978 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AL356473.1-201 | ENST00000406203 | 1408 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | PABPC1P9-201 | ENST00000426076 | 1612 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | RNU6-216P-201 | ENST00000363282 | 104 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | RNU6-461P-201 | ENST00000364195 | 107 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | OR1A2-201 | ENST00000381951 | 930 nt | APPRIS P1 BASIC | 1.95 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | U3.20-201 | ENST00000390909 | 217 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | C1GALT1-202 | ENST00000402468 | 930 nt | TSL 1 (best) BASIC | 1.95 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | BCL2L11-207 | ENST00000405953 | 425 nt | TSL 1 (best) BASIC | 1.95 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | CTNNA2-204 | ENST00000409266 | 432 nt | TSL 3 BASIC | 1.95 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | PPP3R1-202 | ENST00000409377 | 684 nt | TSL 3 BASIC | 1.95 | □□□□□ -2.1 | | |
| HES3 | Q5TGS1 | AL139156.1-201 | ENST00000412785 | 841 nt | BASIC | 1.95 | □□□□□ -2.1 | | |