Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC4.87□□□□□ -1.63
SOX4Q06945 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX4Q06945 SALL4P2-201ENST00000423288 2910 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX4Q06945 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
SOX4Q06945 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX4Q06945 AC009229.4-201ENST00000623854 1947 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 AC026523.2-201ENST00000625039 7739 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
SOX4Q06945 RNU6-371P-201ENST00000364283 108 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 Y_RNA.526-201ENST00000384572 110 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 SDHCP2-201ENST00000398565 501 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX4Q06945 PIGPP3-201ENST00000425307 415 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX4Q06945 MRPL48P1-201ENST00000445390 636 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 FCF1P4-201ENST00000448326 183 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 RPL21P41-201ENST00000459863 264 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.86□□□□□ -1.63
SOX4Q06945 RNU6-397P-201ENST00000516226 104 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 RNU6-570P-201ENST00000517051 105 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 AC069113.1-201ENST00000517763 267 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX4Q06945 CBX3P8-201ENST00000532412 525 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX4Q06945 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX4Q06945 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
SOX4Q06945 AC090517.1-201ENST00000569307 266 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX4Q06945 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX4Q06945 VN1R91P-201ENST00000594377 169 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX4Q06945 MIR6130-201ENST00000619419 109 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.86□□□□□ -1.63
SOX4Q06945 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX4Q06945 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SOX4Q06945 AL672167.1-205ENST00000641112 3080 ntBASIC4.86□□□□□ -1.63
SOX4Q06945 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX4Q06945 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SOX4Q06945 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.85□□□□□ -1.63
SOX4Q06945 RNY1P16-201ENST00000363063 111 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 RNU6-288P-201ENST00000363690 104 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 SNORA51.11-201ENST00000384442 131 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 Y_RNA.518-201ENST00000384552 113 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 RNU6-821P-201ENST00000390995 107 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 AL391219.1-201ENST00000422570 483 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 AL132765.1-201ENST00000434165 553 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.85□□□□□ -1.63
SOX4Q06945 RNU7-169P-201ENST00000459456 61 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 RNU6-897P-201ENST00000517135 105 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 AC107918.3-201ENST00000533272 382 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC4.85□□□□□ -1.63
SOX4Q06945 MIR4273-201ENST00000582824 84 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.85□□□□□ -1.63
SOX4Q06945 AC012433.1-201ENST00000588916 398 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 HMGB2P1-201ENST00000591146 634 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 AL590392.1-201ENST00000604960 446 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 AL160281.1-201ENST00000605307 311 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 MIR6891-201ENST00000618788 93 ntBASIC4.85□□□□□ -1.63
SOX4Q06945 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.85□□□□□ -1.63
SOX4Q06945 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SOX4Q06945 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.85□□□□□ -1.63
SOX4Q06945 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SOX4Q06945 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SOX4Q06945 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SOX4Q06945 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.85□□□□□ -1.63
SOX4Q06945 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SOX4Q06945 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SOX4Q06945 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SOX4Q06945 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SOX4Q06945 AC083843.2-201ENST00000568248 6253 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SOX4Q06945 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.84□□□□□ -1.63
SOX4Q06945 AL450326.2-201ENST00000421913 1962 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
SOX4Q06945 RNU4-50P-201ENST00000364361 141 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 UBBP2-201ENST00000376781 231 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 Y_RNA.785-201ENST00000384290 109 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 RNU6-790P-201ENST00000384479 105 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 Y_RNA.555-201ENST00000384673 110 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 SNORA19-201ENST00000384737 128 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 SNORD73A-201ENST00000386062 65 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 RPL21P90-201ENST00000415692 466 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.84□□□□□ -1.63
SOX4Q06945 RPS3AP46-201ENST00000448352 682 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.84□□□□□ -1.63
SOX4Q06945 RNU6-953P-201ENST00000459154 107 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SOX4Q06945 AC093840.1-201ENST00000511599 336 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.84□□□□□ -1.63
SOX4Q06945 RN7SKP122-201ENST00000515923 296 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 RN7SKP82-201ENST00000516786 223 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.84□□□□□ -1.63
SOX4Q06945 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.84□□□□□ -1.63
SOX4Q06945 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.84□□□□□ -1.63
SOX4Q06945 AC010201.1-201ENST00000605051 540 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 AL591516.1-201ENST00000611326 274 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 AC064801.1-201ENST00000612025 407 ntBASIC4.84□□□□□ -1.63
SOX4Q06945 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SOX4Q06945 AL731566.2-201ENST00000618971 317 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms