Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC5.8□□□□□ -1.48
COL9A1P20849 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL9A1P20849 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC5.79□□□□□ -1.48
COL9A1P20849 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL9A1P20849 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL9A1P20849 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL9A1P20849 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
COL9A1P20849 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.79□□□□□ -1.48
COL9A1P20849 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.79□□□□□ -1.48
COL9A1P20849 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
COL9A1P20849 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL9A1P20849 AC099654.2-201ENST00000433031 1980 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL9A1P20849 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.79□□□□□ -1.48
COL9A1P20849 RNU5F-3P-201ENST00000363767 117 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 U8.10-201ENST00000384260 133 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 RPS12P23-201ENST00000419579 400 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 BPY2DP-201ENST00000422208 265 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 AC139453.3-201ENST00000493276 369 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 RNU6-168P-201ENST00000516189 101 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 RNU6-58P-201ENST00000517143 103 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.79□□□□□ -1.48
COL9A1P20849 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC5.79□□□□□ -1.48
COL9A1P20849 U73479.1-201ENST00000618062 168 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 AL034408.1-202ENST00000636088 415 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 AC241585.2-209ENST00000638217 143 ntBASIC5.79□□□□□ -1.48
COL9A1P20849 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL9A1P20849 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL9A1P20849 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL9A1P20849 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL9A1P20849 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.79□□□□□ -1.48
COL9A1P20849 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL9A1P20849 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL9A1P20849 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
COL9A1P20849 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
COL9A1P20849 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL9A1P20849 SNORD115-8-201ENST00000363856 82 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 SNORD115-38-201ENST00000365037 82 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 SNORA29-201ENST00000384183 140 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 SNORD37.2-201ENST00000391075 66 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 MTHFD2P2-201ENST00000407725 247 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 RNA5SP89-201ENST00000410300 108 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 AC007560.1-201ENST00000426912 237 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 AL078601.1-201ENST00000444542 271 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC5.78□□□□□ -1.48
COL9A1P20849 AC022790.1-201ENST00000522872 204 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.78□□□□□ -1.48
COL9A1P20849 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.78□□□□□ -1.48
COL9A1P20849 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.78□□□□□ -1.48
COL9A1P20849 U7.2-201ENST00000607576 63 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 AC000068.2-201ENST00000608816 460 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
COL9A1P20849 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL9A1P20849 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
COL9A1P20849 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL9A1P20849 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5.78□□□□□ -1.48
COL9A1P20849 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
COL9A1P20849 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
COL9A1P20849 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL9A1P20849 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.78□□□□□ -1.48
COL9A1P20849 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL9A1P20849 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL9A1P20849 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL9A1P20849 OLMALINC-203ENST00000641087 3779 ntBASIC5.78□□□□□ -1.48
COL9A1P20849 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.77□□□□□ -1.48
COL9A1P20849 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
COL9A1P20849 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL9A1P20849 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL9A1P20849 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL9A1P20849 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
COL9A1P20849 RNA5SP335-201ENST00000363817 110 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 Y_RNA.245-201ENST00000364493 95 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC5.77□□□□□ -1.49
COL9A1P20849 AC006026.2-201ENST00000457376 180 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 AC092798.1-201ENST00000458542 409 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 Y_RNA.637-201ENST00000459424 114 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 RN7SL570P-201ENST00000484405 292 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 NIP7P2-201ENST00000485801 544 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 AP001328.1-201ENST00000528550 176 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.77□□□□□ -1.49
COL9A1P20849 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.77□□□□□ -1.49
COL9A1P20849 AC090877.1-201ENST00000561418 344 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC5.77□□□□□ -1.49
COL9A1P20849 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.77□□□□□ -1.49
COL9A1P20849 CYCSP1-201ENST00000604815 315 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 AC069294.1-201ENST00000608397 350 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 MIR6780A-201ENST00000615089 68 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.77□□□□□ -1.49
COL9A1P20849 AC092628.2-201ENST00000622492 339 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.77□□□□□ -1.49
COL9A1P20849 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
COL9A1P20849 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL9A1P20849 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.77□□□□□ -1.49
COL9A1P20849 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL9A1P20849 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL9A1P20849 ADAM24P-201ENST00000398655 2101 ntBASIC5.77□□□□□ -1.49
COL9A1P20849 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.76□□□□□ -1.49
COL9A1P20849 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 AP004607.3-201ENST00000530354 3915 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms