Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RPL7P23-201ENST00000493874 747 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 HMGB3P16-201ENST00000508037 287 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 SNORA40.15-201ENST00000516884 107 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 RNU6-352P-201ENST00000516908 107 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 AC090151.1-201ENST00000520784 730 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 ERHP1-201ENST00000523006 310 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 AC104576.1-201ENST00000524225 88 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.89□□□□□ -1.63
SOX4Q06945 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX4Q06945 MIR4697-201ENST00000582977 78 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 AC067852.3-201ENST00000589177 561 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 AL355812.1-201ENST00000603215 216 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 AP005019.3-201ENST00000620418 560 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.89□□□□□ -1.63
SOX4Q06945 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.89□□□□□ -1.63
SOX4Q06945 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SOX4Q06945 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.89□□□□□ -1.63
SOX4Q06945 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.89□□□□□ -1.63
SOX4Q06945 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.89□□□□□ -1.63
SOX4Q06945 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SOX4Q06945 AC025031.4-201ENST00000621248 3271 ntBASIC4.89□□□□□ -1.63
SOX4Q06945 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SOX4Q06945 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.88□□□□□ -1.63
SOX4Q06945 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
SOX4Q06945 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
SOX4Q06945 Y_RNA.48-201ENST00000362710 103 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 RNU6-596P-201ENST00000365395 98 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX4Q06945 Y_RNA.478-201ENST00000384358 107 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 MT-TC-201ENST00000387405 66 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 AL590704.1-201ENST00000402856 794 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 AL592291.1-201ENST00000403830 352 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.88□□□□□ -1.63
SOX4Q06945 RNU6-174P-201ENST00000410406 106 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 AC092447.6-201ENST00000414578 210 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 AL356387.2-201ENST00000422272 243 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 AC139712.2-201ENST00000424302 339 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 OR2AQ1P-201ENST00000451972 200 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 BX276092.4-201ENST00000452056 248 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 AP000942.1-201ENST00000463969 747 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 RPS23P7-201ENST00000466210 444 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
SOX4Q06945 RNU6-182P-201ENST00000516970 105 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 RNU6-111P-201ENST00000517179 105 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.88□□□□□ -1.63
SOX4Q06945 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX4Q06945 AC006600.1-201ENST00000572529 153 ntBASIC4.88□□□□□ -1.63
SOX4Q06945 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.88□□□□□ -1.63
SOX4Q06945 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.88□□□□□ -1.63
SOX4Q06945 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SOX4Q06945 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
SOX4Q06945 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SOX4Q06945 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SOX4Q06945 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SOX4Q06945 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SOX4Q06945 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX4Q06945 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SOX4Q06945 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX4Q06945 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.87□□□□□ -1.63
SOX4Q06945 CPHL1P-201ENST00000461341 3407 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SOX4Q06945 AC107027.3-201ENST00000565095 3473 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.87□□□□□ -1.63
SOX4Q06945 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX4Q06945 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SOX4Q06945 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.87□□□□□ -1.63
SOX4Q06945 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX4Q06945 RNU6-989P-201ENST00000362756 107 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RNU1-83P-201ENST00000363426 164 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RNA5SP509-201ENST00000364577 119 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 AC019155.1-201ENST00000382242 574 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RNU6-14P-201ENST00000384630 106 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RNU6-178P-201ENST00000384631 104 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 SNORA68.2-201ENST00000391263 128 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 AC110754.1-201ENST00000399740 601 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX4Q06945 OR2AH1P-201ENST00000425717 928 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RPS12P10-201ENST00000427031 377 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 TPT1P12-201ENST00000448968 492 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RPL23AP24-201ENST00000458203 385 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RPL37P6-201ENST00000460682 294 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RN7SL385P-201ENST00000468873 276 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 AC069499.1-201ENST00000489433 509 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RN7SKP277-201ENST00000516895 283 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 RNU7-4P-201ENST00000516961 62 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.87□□□□□ -1.63
SOX4Q06945 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.87□□□□□ -1.63
SOX4Q06945 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.87□□□□□ -1.63
SOX4Q06945 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.87□□□□□ -1.63
SOX4Q06945 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.87□□□□□ -1.63
SOX4Q06945 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.87□□□□□ -1.63
SOX4Q06945 RNU6-85P-201ENST00000605989 107 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 SDR42E1P2-201ENST00000614861 481 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 SDR42E1P4-201ENST00000620894 481 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 AC011944.2-201ENST00000624440 683 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 AL512643.1-201ENST00000635735 524 ntBASIC4.87□□□□□ -1.63
SOX4Q06945 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SOX4Q06945 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX4Q06945 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX4Q06945 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms