Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.47□□□□□ -1.85
SOX2P48431 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX2P48431 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX2P48431 AC006270.2-201ENST00000578523 652 ntBASIC3.47□□□□□ -1.85
SOX2P48431 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.47□□□□□ -1.85
SOX2P48431 MIR4424-201ENST00000585257 86 ntBASIC3.47□□□□□ -1.85
SOX2P48431 AC244505.7-201ENST00000599675 272 ntBASIC3.47□□□□□ -1.85
SOX2P48431 AL117336.2-201ENST00000602435 335 ntBASIC3.47□□□□□ -1.85
SOX2P48431 C8orf59P2-201ENST00000603441 271 ntBASIC3.47□□□□□ -1.85
SOX2P48431 DPPA3P3-201ENST00000603842 430 ntBASIC3.47□□□□□ -1.85
SOX2P48431 AC013553.2-201ENST00000604244 589 ntBASIC3.47□□□□□ -1.85
SOX2P48431 AL158032.1-201ENST00000605401 106 ntBASIC3.47□□□□□ -1.85
SOX2P48431 BRDTP1-201ENST00000605735 677 ntBASIC3.47□□□□□ -1.85
SOX2P48431 AL390240.1-201ENST00000612950 384 ntBASIC3.47□□□□□ -1.85
SOX2P48431 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.47□□□□□ -1.85
SOX2P48431 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.47□□□□□ -1.85
SOX2P48431 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.47□□□□□ -1.85
SOX2P48431 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
SOX2P48431 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX2P48431 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX2P48431 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.46□□□□□ -1.85
SOX2P48431 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
SOX2P48431 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
SOX2P48431 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
SOX2P48431 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SOX2P48431 Y_RNA.166-201ENST00000363730 102 ntBASIC3.46□□□□□ -1.86
SOX2P48431 RNVU1-6-201ENST00000364688 164 ntBASIC3.46□□□□□ -1.86
SOX2P48431 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SOX2P48431 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SOX2P48431 SNORA32.2-201ENST00000384049 122 ntBASIC3.46□□□□□ -1.86
SOX2P48431 RNU6-817P-201ENST00000391083 104 ntBASIC3.46□□□□□ -1.86
SOX2P48431 RNU6-510P-201ENST00000391239 108 ntBASIC3.46□□□□□ -1.86
SOX2P48431 HMGN2P8-201ENST00000391458 268 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AL133270.1-201ENST00000402635 279 ntBASIC3.46□□□□□ -1.86
SOX2P48431 Y_RNA.615-201ENST00000410769 117 ntBASIC3.46□□□□□ -1.86
SOX2P48431 RN7SKP140-201ENST00000411196 284 ntBASIC3.46□□□□□ -1.86
SOX2P48431 HSPE1P12-201ENST00000412576 301 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.46□□□□□ -1.86
SOX2P48431 HMGB1P27-201ENST00000431429 603 ntBASIC3.46□□□□□ -1.86
SOX2P48431 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.46□□□□□ -1.86
SOX2P48431 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.46□□□□□ -1.86
SOX2P48431 RN7SL604P-201ENST00000492589 296 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AC078817.1-201ENST00000492623 435 ntBASIC3.46□□□□□ -1.86
SOX2P48431 RNU6-1314P-201ENST00000517139 104 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.46□□□□□ -1.86
SOX2P48431 BTF3P12-201ENST00000519620 469 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.46□□□□□ -1.86
SOX2P48431 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.46□□□□□ -1.86
SOX2P48431 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.46□□□□□ -1.86
SOX2P48431 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.46□□□□□ -1.86
SOX2P48431 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.46□□□□□ -1.86
SOX2P48431 AC007687.1-201ENST00000602704 304 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AL138889.2-201ENST00000603883 242 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AP001330.4-201ENST00000604350 154 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AL670379.4-201ENST00000605279 254 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AL359547.2-201ENST00000615810 418 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AC009248.2-201ENST00000619826 254 ntBASIC3.46□□□□□ -1.86
SOX2P48431 AL357559.1-201ENST00000622228 274 ntBASIC3.46□□□□□ -1.86
SOX2P48431 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.46□□□□□ -1.86
SOX2P48431 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.46□□□□□ -1.86
SOX2P48431 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.46□□□□□ -1.86
SOX2P48431 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
SOX2P48431 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SOX2P48431 MFSD8-216ENST00000641147 4009 ntBASIC3.46□□□□□ -1.86
SOX2P48431 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
SOX2P48431 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
SOX2P48431 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SOX2P48431 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
SOX2P48431 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SOX2P48431 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SOX2P48431 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
SOX2P48431 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SOX2P48431 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SOX2P48431 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SOX2P48431 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
SOX2P48431 Y_RNA.11-201ENST00000362375 109 ntBASIC3.45□□□□□ -1.86
SOX2P48431 RNU1-18P-201ENST00000363062 164 ntBASIC3.45□□□□□ -1.86
SOX2P48431 Y_RNA.100-201ENST00000363141 102 ntBASIC3.45□□□□□ -1.86
SOX2P48431 RNU6-116P-201ENST00000384042 109 ntBASIC3.45□□□□□ -1.86
SOX2P48431 RNU6-398P-201ENST00000384143 109 ntBASIC3.45□□□□□ -1.86
SOX2P48431 RPL32P23-201ENST00000397237 405 ntBASIC3.45□□□□□ -1.86
SOX2P48431 AL592114.1-201ENST00000403842 483 ntBASIC3.45□□□□□ -1.86
SOX2P48431 RPL37P18-201ENST00000411602 243 ntBASIC3.45□□□□□ -1.86
SOX2P48431 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.45□□□□□ -1.86
SOX2P48431 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.45□□□□□ -1.86
SOX2P48431 MTCO3P46-201ENST00000425787 232 ntBASIC3.45□□□□□ -1.86
SOX2P48431 MTND4P28-201ENST00000426217 387 ntBASIC3.45□□□□□ -1.86
SOX2P48431 AC068287.1-201ENST00000430283 295 ntBASIC3.45□□□□□ -1.86
SOX2P48431 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.45□□□□□ -1.86
SOX2P48431 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.45□□□□□ -1.86
SOX2P48431 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.45□□□□□ -1.86
SOX2P48431 RANP8-201ENST00000444720 713 ntBASIC3.45□□□□□ -1.86
SOX2P48431 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SOX2P48431 CEACAMP4-201ENST00000457676 421 ntBASIC3.45□□□□□ -1.86
SOX2P48431 RN7SL93P-201ENST00000463035 293 ntBASIC3.45□□□□□ -1.86
SOX2P48431 TRBV1-201ENST00000476502 284 ntBASIC3.45□□□□□ -1.86
SOX2P48431 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.45□□□□□ -1.86
SOX2P48431 AL049874.1-201ENST00000489560 388 ntBASIC3.45□□□□□ -1.86
SOX2P48431 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.45□□□□□ -1.86
SOX2P48431 AC078918.1-201ENST00000498515 228 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms