Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
MSH5O43196 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
MSH5O43196 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
MSH5O43196 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 AP002833.3-201ENST00000625075 2265 ntBASIC8.78□□□□□ -1
MSH5O43196 SNORD116-13-201ENST00000384408 92 ntBASIC8.78□□□□□ -1
MSH5O43196 Y_RNA.507-201ENST00000384500 99 ntBASIC8.78□□□□□ -1
MSH5O43196 AL590635.1-201ENST00000406314 586 ntBASIC8.78□□□□□ -1
MSH5O43196 U3.36-201ENST00000408418 213 ntBASIC8.78□□□□□ -1
MSH5O43196 AC108479.1-201ENST00000431142 427 ntBASIC8.78□□□□□ -1
MSH5O43196 CYCSP12-201ENST00000437729 300 ntBASIC8.78□□□□□ -1
MSH5O43196 AC006026.2-201ENST00000457376 180 ntBASIC8.78□□□□□ -1
MSH5O43196 RN7SL379P-201ENST00000479912 293 ntBASIC8.78□□□□□ -1
MSH5O43196 RN7SL797P-201ENST00000486314 297 ntBASIC8.78□□□□□ -1
MSH5O43196 RNU6-871P-201ENST00000516122 100 ntBASIC8.78□□□□□ -1
MSH5O43196 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC8.78□□□□□ -1
MSH5O43196 AC073413.2-201ENST00000604332 360 ntBASIC8.78□□□□□ -1
MSH5O43196 FAM27E2-201ENST00000619668 403 ntBASIC8.78□□□□□ -1
MSH5O43196 SNX18P10-201ENST00000625014 519 ntBASIC8.78□□□□□ -1
MSH5O43196 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC8.78□□□□□ -1
MSH5O43196 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC8.78□□□□□ -1
MSH5O43196 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC8.78□□□□□ -1
MSH5O43196 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC8.78□□□□□ -1
MSH5O43196 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC8.78□□□□□ -1
MSH5O43196 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC8.77□□□□□ -1.01
MSH5O43196 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC8.77□□□□□ -1.01
MSH5O43196 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
MSH5O43196 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC8.77□□□□□ -1.01
MSH5O43196 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC8.77□□□□□ -1.01
MSH5O43196 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC8.77□□□□□ -1.01
MSH5O43196 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
MSH5O43196 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
MSH5O43196 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
MSH5O43196 SNORA51.1-201ENST00000363243 140 ntBASIC8.77□□□□□ -1.01
MSH5O43196 Y_RNA.298-201ENST00000364960 107 ntBASIC8.77□□□□□ -1.01
MSH5O43196 Y_RNA.467-201ENST00000384297 102 ntBASIC8.77□□□□□ -1.01
MSH5O43196 RN7SKP61-201ENST00000410642 295 ntBASIC8.77□□□□□ -1.01
MSH5O43196 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC8.77□□□□□ -1.01
MSH5O43196 RPL23AP1-201ENST00000428990 471 ntBASIC8.77□□□□□ -1.01
MSH5O43196 AL590128.1-201ENST00000433407 286 ntBASIC8.77□□□□□ -1.01
MSH5O43196 RNU6-1095P-201ENST00000516148 108 ntBASIC8.77□□□□□ -1.01
MSH5O43196 RNA5SP278-201ENST00000517055 102 ntBASIC8.77□□□□□ -1.01
MSH5O43196 HIGD1AP1-201ENST00000550979 275 ntBASIC8.77□□□□□ -1.01
MSH5O43196 AC022523.2-201ENST00000561045 150 ntBASIC8.77□□□□□ -1.01
MSH5O43196 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC8.77□□□□□ -1.01
MSH5O43196 SMIM12P1-201ENST00000603004 274 ntBASIC8.77□□□□□ -1.01
MSH5O43196 MIR4302-201ENST00000638058 60 ntBASIC8.77□□□□□ -1.01
MSH5O43196 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC8.77□□□□□ -1.01
MSH5O43196 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC8.77□□□□□ -1.01
MSH5O43196 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC8.77□□□□□ -1.01
MSH5O43196 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC8.77□□□□□ -1.01
MSH5O43196 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
MSH5O43196 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
MSH5O43196 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC8.77□□□□□ -1.01
MSH5O43196 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 AC110373.1-201ENST00000505994 3505 ntBASIC8.76□□□□□ -1.01
MSH5O43196 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC8.76□□□□□ -1.01
MSH5O43196 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 Y_RNA.66-201ENST00000362862 102 ntBASIC8.76□□□□□ -1.01
MSH5O43196 RNU6-1017P-201ENST00000363613 106 ntBASIC8.76□□□□□ -1.01
MSH5O43196 Y_RNA.360-201ENST00000365512 102 ntBASIC8.76□□□□□ -1.01
MSH5O43196 RNU6-499P-201ENST00000365615 107 ntBASIC8.76□□□□□ -1.01
MSH5O43196 RNU6-1201P-201ENST00000384227 107 ntBASIC8.76□□□□□ -1.01
MSH5O43196 MT-TC-201ENST00000387405 66 ntBASIC8.76□□□□□ -1.01
MSH5O43196 RPL12P16-201ENST00000431098 498 ntBASIC8.76□□□□□ -1.01
MSH5O43196 AC009238.1-201ENST00000442165 424 ntBASIC8.76□□□□□ -1.01
MSH5O43196 AC009237.6-201ENST00000446969 424 ntBASIC8.76□□□□□ -1.01
MSH5O43196 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC8.76□□□□□ -1.01
MSH5O43196 RPS26P48-201ENST00000491713 339 ntBASIC8.76□□□□□ -1.01
MSH5O43196 AC009163.5-201ENST00000575421 637 ntBASIC8.76□□□□□ -1.01
MSH5O43196 AL355812.1-201ENST00000603215 216 ntBASIC8.76□□□□□ -1.01
MSH5O43196 AC061999.1-201ENST00000624454 177 ntBASIC8.76□□□□□ -1.01
MSH5O43196 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC8.76□□□□□ -1.01
MSH5O43196 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC8.76□□□□□ -1.01
MSH5O43196 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC8.76□□□□□ -1.01
MSH5O43196 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC8.76□□□□□ -1.01
MSH5O43196 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH5O43196 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC8.75□□□□□ -1.01
MSH5O43196 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH5O43196 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH5O43196 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH5O43196 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC8.75□□□□□ -1.01
MSH5O43196 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
MSH5O43196 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH5O43196 SNORD116-10-201ENST00000363791 102 ntBASIC8.75□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms