Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
VPS9D1Q9Y2B5 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.48
VPS9D1Q9Y2B5 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.48
VPS9D1Q9Y2B5 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
VPS9D1Q9Y2B5 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-1155P-201ENST00000363554 107 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-245P-201ENST00000384020 107 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 CYCSP32-201ENST00000440548 321 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 EEF1A1P1-201ENST00000447052 739 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 AC144530.1-201ENST00000452862 555 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 AC006539.1-201ENST00000481419 501 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 LSM3P4-201ENST00000502948 309 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 AC008507.3-201ENST00000585753 472 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 MIR6793-201ENST00000612376 63 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 AL136228.1-201ENST00000622221 319 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 MIR1910-201ENST00000636955 80 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 AL121839.2-201ENST00000565058 6943 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 AC092070.2-203ENST00000598377 3644 ntBASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS9D1Q9Y2B5 PARP4P2-201ENST00000446672 3326 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 Y_RNA.35-201ENST00000362601 101 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 RNU5A-1-201ENST00000362698 116 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-763P-201ENST00000390865 106 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-159P-201ENST00000391080 106 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 MIR1282-201ENST00000408865 101 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AL122020.1-201ENST00000472287 459 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AC010265.1-201ENST00000513509 211 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 RN7SKP35-201ENST00000517210 151 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AC018442.3-201ENST00000523025 183 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AC084121.1-201ENST00000533882 835 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 MIR4776-2-201ENST00000580204 80 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AC015726.2-201ENST00000620112 122 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AL773545.4-201ENST00000637262 310 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AL513478.4-201ENST00000641636 310 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 AC069528.2-201ENST00000624849 1991 ntBASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS9D1Q9Y2B5 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-137P-201ENST00000363680 108 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 MIR130B-202ENST00000385018 82 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 MTHFD2P2-201ENST00000407725 247 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 EIF1AXP1-201ENST00000419267 435 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 RPS12P17-201ENST00000438591 377 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 U8.19-201ENST00000459095 133 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-1095P-201ENST00000516148 108 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 SNORA31.22-201ENST00000517204 135 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 IGKV3D-25-201ENST00000519599 235 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 AC005868.1-201ENST00000536421 331 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 Y_RNA.757-201ENST00000578934 114 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 MIR4260-201ENST00000583107 67 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 AC123786.2-201ENST00000603459 275 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 MIR6778-201ENST00000617912 73 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 AC106754.2-201ENST00000623006 233 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms