Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNA5SP73-201ENST00000516744 108 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 AL352979.3-201ENST00000553515 247 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 BTBD10P1-201ENST00000549824 1352 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 AC008079.2-201ENST00000623543 20396 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 ASNSP1-201ENST00000518311 1939 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 MAPK10-320ENST00000641462 6696 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 RNU6-328P-201ENST00000390887 106 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 RNA5SP111-201ENST00000411386 101 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 RPL31P12-201ENST00000422587 358 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 YME1L1P1-201ENST00000429435 297 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AC004866.2-201ENST00000438285 481 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 PRSS3P4-201ENST00000453323 162 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 TAF8-207ENST00000482432 556 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 RNA5SP446-201ENST00000515955 82 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 RNU6-1069P-201ENST00000516612 133 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 RNU6-677P-201ENST00000516914 101 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 DYNLL1P4-201ENST00000549314 266 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AL355836.1-201ENST00000555951 870 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 RPL23AP84-201ENST00000571193 464 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AP000654.2-201ENST00000605633 586 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AL121655.1-201ENST00000605811 308 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 7SK.10-201ENST00000621414 298 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AC091905.2-201ENST00000623143 306 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AC091925.1-201ENST00000623204 462 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 AL161912.2-201ENST00000565707 3007 ntBASIC5.48□□□□□ -1.53
CCDC87Q9NVE4 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 SNORD3E-201ENST00000362899 217 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 Y_RNA.133-201ENST00000363428 110 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 RNU6-190P-201ENST00000384154 102 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 SNORA16.2-201ENST00000390991 127 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 RNU4-78P-201ENST00000410940 126 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AL445584.1-201ENST00000431451 330 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 NEFMP1-201ENST00000443423 1006 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AP001086.1-201ENST00000494882 321 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AC021146.2-201ENST00000504736 556 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AC104136.1-201ENST00000512969 394 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AP006587.4-201ENST00000526053 529 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 CYCSP27-201ENST00000527643 293 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AL158032.1-201ENST00000605401 106 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AC069200.1-201ENST00000609511 323 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 DUSP12P1-201ENST00000612874 516 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 ATP5A1P2-202ENST00000616464 443 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AC138305.3-201ENST00000624988 240 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 AP001642.1-201ENST00000624727 2117 ntBASIC5.47□□□□□ -1.53
CCDC87Q9NVE4 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.46□□□□□ -1.53
CCDC87Q9NVE4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.53
CCDC87Q9NVE4 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 RNU6-1249P-201ENST00000363237 111 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 RNU6-263P-201ENST00000363811 107 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AL583834.1-201ENST00000406943 343 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 RNU2-43P-201ENST00000410306 190 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms