Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 RNA5SP401-201ENST00000515920 127 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 SNORA40.12-201ENST00000516329 111 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 RNU2-10P-201ENST00000516375 211 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 RNU7-51P-201ENST00000516560 62 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 RNU6-358P-201ENST00000516564 75 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 SNORA31.20-201ENST00000517111 133 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS50Q96JG6 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.82□□□□□ -1.8
VPS50Q96JG6 AP001646.1-201ENST00000527936 915 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 HIF1AP1-201ENST00000553642 175 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 AC120057.2-201ENST00000571520 271 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS50Q96JG6 AC012417.1-201ENST00000582307 1039 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 RNVU1-4-201ENST00000612985 164 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS50Q96JG6 AC015967.1-201ENST00000619893 476 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 AC244100.1-202ENST00000621554 382 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 YWHAEP7-203ENST00000622054 312 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 AC093648.1-201ENST00000623546 606 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 AC005609.4-201ENST00000625071 447 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 FER-210ENST00000628534 558 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS50Q96JG6 U6.98-201ENST00000637157 84 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS50Q96JG6 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS50Q96JG6 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS50Q96JG6 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS50Q96JG6 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS50Q96JG6 DDX10P1-201ENST00000448545 1933 ntBASIC3.82□□□□□ -1.8
VPS50Q96JG6 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS50Q96JG6 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS50Q96JG6 HSPE1P11-201ENST00000339579 310 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 MIR372-201ENST00000362225 67 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 SNORD35B-201ENST00000363660 87 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 SNORA23-201ENST00000365128 182 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 FGF7P8-201ENST00000402994 292 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 AP000567.1-201ENST00000406413 156 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AC114491.1-201ENST00000416095 246 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 AL139413.1-201ENST00000421309 217 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 PPP1R11P2-201ENST00000423543 382 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 NEK4P1-201ENST00000433383 879 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 VDAC1P3-201ENST00000434069 851 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 MTCO3P45-201ENST00000443036 613 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 AL500522.2-201ENST00000448562 343 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 AC008481.1-201ENST00000463278 396 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 RPL21P129-201ENST00000491732 478 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 FCF1P3-201ENST00000496394 590 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 SNORD27.1-201ENST00000516319 72 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 RNU7-143P-201ENST00000516781 65 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 SNORA31.22-201ENST00000517204 135 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 HMGN1P28-201ENST00000521340 364 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AC012182.1-201ENST00000570133 895 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AP001029.3-201ENST00000588063 596 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 BNIP3P30-201ENST00000601184 574 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AL354950.2-201ENST00000617939 290 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 MIR6500-201ENST00000622700 86 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AC024614.3-201ENST00000637860 256 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS50Q96JG6 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AC005183.1-201ENST00000603687 1979 ntBASIC3.81□□□□□ -1.8
VPS50Q96JG6 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS50Q96JG6 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS50Q96JG6 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS50Q96JG6 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS50Q96JG6 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS50Q96JG6 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS50Q96JG6 AC091152.2-201ENST00000591628 2569 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS50Q96JG6 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
VPS50Q96JG6 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS50Q96JG6 RNU6-451P-201ENST00000362921 107 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 SNORA62.3-201ENST00000365110 153 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
VPS50Q96JG6 RNU6-641P-201ENST00000384006 107 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 RNU6-876P-201ENST00000391295 104 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 MTHFD2P2-201ENST00000407725 247 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 RN7SKP285-201ENST00000410137 318 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 RNU6-1068P-201ENST00000410958 103 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 AC138393.2-201ENST00000414742 246 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 RPL21P66-201ENST00000426566 466 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 MED13P1-201ENST00000428342 171 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 AC007389.2-201ENST00000434630 306 ntBASIC3.8□□□□□ -1.8
VPS50Q96JG6 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS50Q96JG6 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS50Q96JG6 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms