Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
MSX1P28360 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 AC083899.1-201ENST00000454465 3819 ntBASIC5.06□□□□□ -1.6
MSX1P28360 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.06□□□□□ -1.6
MSX1P28360 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.05□□□□□ -1.6
MSX1P28360 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX1P28360 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
MSX1P28360 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
MSX1P28360 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
MSX1P28360 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
MSX1P28360 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.05□□□□□ -1.6
MSX1P28360 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.05□□□□□ -1.6
MSX1P28360 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.05□□□□□ -1.6
MSX1P28360 RNA5SP319-201ENST00000362768 119 ntBASIC5.05□□□□□ -1.6
MSX1P28360 Y_RNA.398-201ENST00000383952 99 ntBASIC5.05□□□□□ -1.6
MSX1P28360 RNU6-1035P-201ENST00000384477 107 ntBASIC5.05□□□□□ -1.6
MSX1P28360 AL358453.1-201ENST00000422522 250 ntBASIC5.05□□□□□ -1.6
MSX1P28360 MTCO1P5-201ENST00000433573 344 ntBASIC5.05□□□□□ -1.6
MSX1P28360 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC5.05□□□□□ -1.6
MSX1P28360 OR6D1P-201ENST00000436165 939 ntBASIC5.05□□□□□ -1.6
MSX1P28360 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX1P28360 AZGP1P2-201ENST00000454506 345 ntBASIC5.05□□□□□ -1.6
MSX1P28360 RPS29P27-201ENST00000463711 170 ntBASIC5.05□□□□□ -1.6
MSX1P28360 AC087477.1-201ENST00000465747 340 ntBASIC5.05□□□□□ -1.6
MSX1P28360 AL049830.2-201ENST00000480072 201 ntBASIC5.05□□□□□ -1.6
MSX1P28360 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX1P28360 AC027288.2-201ENST00000553028 243 ntBASIC5.05□□□□□ -1.6
MSX1P28360 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.05□□□□□ -1.6
MSX1P28360 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.05□□□□□ -1.6
MSX1P28360 AL139124.1-201ENST00000609123 421 ntBASIC5.05□□□□□ -1.6
MSX1P28360 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC5.05□□□□□ -1.6
MSX1P28360 AC114774.1-201ENST00000507410 1770 ntBASIC5.05□□□□□ -1.6
MSX1P28360 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX1P28360 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX1P28360 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX1P28360 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.05□□□□□ -1.6
MSX1P28360 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX1P28360 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
MSX1P28360 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX1P28360 AC083843.3-201ENST00000623679 2186 ntBASIC5.05□□□□□ -1.6
MSX1P28360 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX1P28360 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.05□□□□□ -1.6
MSX1P28360 AL451142.2-201ENST00000429076 2090 ntBASIC5.04□□□□□ -1.6
MSX1P28360 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSX1P28360 AC008725.1-201ENST00000605123 2263 ntBASIC5.04□□□□□ -1.6
MSX1P28360 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX1P28360 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
MSX1P28360 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX1P28360 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX1P28360 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSX1P28360 RNU6-1301P-201ENST00000362724 104 ntBASIC5.04□□□□□ -1.6
MSX1P28360 RNA5SP234-201ENST00000363916 119 ntBASIC5.04□□□□□ -1.6
MSX1P28360 MIR223-201ENST00000385204 110 ntBASIC5.04□□□□□ -1.6
MSX1P28360 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
MSX1P28360 RNU6-918P-201ENST00000391219 106 ntBASIC5.04□□□□□ -1.6
MSX1P28360 GLULP6-201ENST00000399502 913 ntBASIC5.04□□□□□ -1.6
MSX1P28360 Y_RNA.590-201ENST00000410140 107 ntBASIC5.04□□□□□ -1.6
MSX1P28360 RNU6-1025P-201ENST00000410629 104 ntBASIC5.04□□□□□ -1.6
MSX1P28360 AL513331.1-201ENST00000411908 397 ntBASIC5.04□□□□□ -1.6
MSX1P28360 AC140479.3-201ENST00000418944 1126 ntBASIC5.04□□□□□ -1.6
MSX1P28360 AL158156.1-201ENST00000422509 473 ntBASIC5.04□□□□□ -1.6
MSX1P28360 GEMIN8P3-201ENST00000445417 720 ntBASIC5.04□□□□□ -1.6
MSX1P28360 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX1P28360 snoU13.3-201ENST00000459441 104 ntBASIC5.04□□□□□ -1.6
MSX1P28360 RN7SL197P-201ENST00000466981 299 ntBASIC5.04□□□□□ -1.6
MSX1P28360 AC005532.2-201ENST00000467154 373 ntBASIC5.04□□□□□ -1.6
MSX1P28360 RN7SL329P-201ENST00000467740 299 ntBASIC5.04□□□□□ -1.6
MSX1P28360 RN7SL826P-201ENST00000479724 288 ntBASIC5.04□□□□□ -1.6
MSX1P28360 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX1P28360 Y_RNA.679-201ENST00000516416 91 ntBASIC5.04□□□□□ -1.6
MSX1P28360 AC022790.1-201ENST00000522872 204 ntBASIC5.04□□□□□ -1.6
MSX1P28360 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX1P28360 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX1P28360 MIR4716-201ENST00000579628 84 ntBASIC5.04□□□□□ -1.6
MSX1P28360 MIR4512-201ENST00000583257 77 ntBASIC5.04□□□□□ -1.6
MSX1P28360 MIR4282-201ENST00000583613 67 ntBASIC5.04□□□□□ -1.6
MSX1P28360 BRDTP1-201ENST00000605735 677 ntBASIC5.04□□□□□ -1.6
MSX1P28360 SNORD113-5-201ENST00000607261 78 ntBASIC5.04□□□□□ -1.6
MSX1P28360 AC132068.1-201ENST00000623805 459 ntBASIC5.04□□□□□ -1.6
MSX1P28360 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX1P28360 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX1P28360 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
MSX1P28360 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
MSX1P28360 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSX1P28360 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSX1P28360 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
MSX1P28360 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX1P28360 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX1P28360 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
MSX1P28360 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
MSX1P28360 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.03□□□□□ -1.6
MSX1P28360 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX1P28360 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX1P28360 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX1P28360 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSX1P28360 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX1P28360 RNU6-227P-201ENST00000362865 103 ntBASIC5.03□□□□□ -1.6
MSX1P28360 SNORA5.1-201ENST00000384275 131 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms