Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.79□□□□□ -1.64
COL8A1P27658 BTBD10P1-201ENST00000549824 1352 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC4.78□□□□□ -1.64
COL8A1P27658 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC4.78□□□□□ -1.64
COL8A1P27658 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC4.78□□□□□ -1.64
COL8A1P27658 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 THAP12P9-201ENST00000503971 2360 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
COL8A1P27658 AC135776.4-201ENST00000624300 1904 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
COL8A1P27658 LINC01963-201ENST00000562038 3148 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
COL8A1P27658 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL8A1P27658 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 SNORA17.1-201ENST00000362945 126 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 Y_RNA.121-201ENST00000363309 113 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 Y_RNA.217-201ENST00000364214 105 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 SNORA70.2-201ENST00000364506 135 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 Y_RNA.446-201ENST00000384178 104 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 RNU6-476P-201ENST00000384726 107 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 RNA5SP91-201ENST00000390902 119 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 RN7SKP151-201ENST00000410230 316 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 RN7SKP17-201ENST00000411242 351 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 OR2AM1P-201ENST00000422137 422 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 USP9YP7-201ENST00000436723 430 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 USP9YP32-201ENST00000452432 430 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 Y_RNA.641-201ENST00000459414 105 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 AC073901.1-201ENST00000462471 408 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 RPS23P7-201ENST00000466210 444 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 HMGB3P3-201ENST00000510526 400 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 Y_RNA.694-201ENST00000516677 117 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 IGLV3-24-201ENST00000517477 197 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4.78□□□□□ -1.64
COL8A1P27658 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.78□□□□□ -1.64
COL8A1P27658 AC025588.3-201ENST00000604182 274 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC4.78□□□□□ -1.64
COL8A1P27658 RMST_4.1-201ENST00000616886 107 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 AC074101.1-201ENST00000637861 241 ntBASIC4.78□□□□□ -1.64
COL8A1P27658 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.78□□□□□ -1.64
COL8A1P27658 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL8A1P27658 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
COL8A1P27658 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC4.77□□□□□ -1.65
COL8A1P27658 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 AC027228.2-201ENST00000567141 2154 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 SNORD1C-201ENST00000363315 78 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 RNU6-147P-201ENST00000383983 107 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 RNU6-926P-201ENST00000384075 107 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 RNA5SP87-201ENST00000384155 118 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 MIR130A-201ENST00000385274 89 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL8A1P27658 AL022722.2-201ENST00000402519 180 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.77□□□□□ -1.65
COL8A1P27658 RNA5SP89-201ENST00000410300 108 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 MRPS21P2-201ENST00000424704 264 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 RPL23AP58-201ENST00000440453 469 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.77□□□□□ -1.65
COL8A1P27658 AC074290.1-201ENST00000448883 135 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
COL8A1P27658 AC026402.1-201ENST00000513642 170 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 SUMO2P18-201ENST00000518873 252 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 EDDM3DP-201ENST00000554692 434 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 AC008749.1-201ENST00000597650 306 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 MIR6129-201ENST00000616087 109 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 UBA3-213ENST00000631029 123 ntTSL 5 BASIC4.77□□□□□ -1.65
COL8A1P27658 AC100778.3-201ENST00000580060 1750 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.77□□□□□ -1.65
COL8A1P27658 AC232271.1-201ENST00000602455 2715 ntBASIC4.77□□□□□ -1.65
COL8A1P27658 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL8A1P27658 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL8A1P27658 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL8A1P27658 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
COL8A1P27658 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL8A1P27658 GVINP1-202ENST00000531871 7271 ntBASIC4.76□□□□□ -1.65
COL8A1P27658 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
COL8A1P27658 AL031595.2-201ENST00000624215 19071 ntBASIC4.76□□□□□ -1.65
COL8A1P27658 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL8A1P27658 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
COL8A1P27658 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC4.76□□□□□ -1.65
COL8A1P27658 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL8A1P27658 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL8A1P27658 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms