Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC9.57□□□□□ -0.88
SENP3Q9H4L4 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC9.57□□□□□ -0.88
SENP3Q9H4L4 PRNCR1-201ENST00000635449 12727 ntBASIC9.57□□□□□ -0.88
SENP3Q9H4L4 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC9.57□□□□□ -0.88
SENP3Q9H4L4 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC9.57□□□□□ -0.88
SENP3Q9H4L4 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
SENP3Q9H4L4 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC9.57□□□□□ -0.88
SENP3Q9H4L4 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
SENP3Q9H4L4 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 AC018630.2-201ENST00000534866 2403 ntBASIC9.56□□□□□ -0.88
SENP3Q9H4L4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 RNU6-315P-201ENST00000362666 107 ntBASIC9.56□□□□□ -0.88
SENP3Q9H4L4 U8.15-201ENST00000390947 134 ntBASIC9.56□□□□□ -0.88
SENP3Q9H4L4 RNA5SP390-201ENST00000410191 113 ntBASIC9.56□□□□□ -0.88
SENP3Q9H4L4 AC018645.1-201ENST00000505003 109 ntBASIC9.56□□□□□ -0.88
SENP3Q9H4L4 AL390198.2-201ENST00000510553 222 ntBASIC9.56□□□□□ -0.88
SENP3Q9H4L4 SNORA74.1-201ENST00000516320 180 ntBASIC9.56□□□□□ -0.88
SENP3Q9H4L4 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 AC090897.2-201ENST00000581715 130 ntBASIC9.56□□□□□ -0.88
SENP3Q9H4L4 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC9.56□□□□□ -0.88
SENP3Q9H4L4 AL096816.1-201ENST00000623300 2920 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 C4BPAP1-201ENST00000415474 1893 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 AC034111.1-201ENST00000562143 3770 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 RNA5SP354-201ENST00000391247 136 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 AC009237.10-201ENST00000414112 510 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 AC245102.2-201ENST00000448956 180 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 AC068228.1-201ENST00000461723 211 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 SNORD46.2-201ENST00000516021 102 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 AC011602.1-201ENST00000546484 331 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 CYCSP38-201ENST00000559840 322 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 AP001264.1-201ENST00000620602 703 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 CCT5-215ENST00000625723 135 ntTSL 5 BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 AL359263.1-201ENST00000441188 2796 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC9.55□□□□□ -0.88
SENP3Q9H4L4 CTAGE11P-201ENST00000451540 2353 ntBASIC9.55□□□□□ -0.88
SENP3Q9H4L4 AC139713.2-214ENST00000642059 1811 ntBASIC9.54□□□□□ -0.88
SENP3Q9H4L4 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 AC007406.5-201ENST00000570140 3170 ntBASIC9.54□□□□□ -0.88
SENP3Q9H4L4 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 CD101-202ENST00000369470 3324 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 RNU4-82P-201ENST00000362443 140 ntBASIC9.54□□□□□ -0.88
SENP3Q9H4L4 SNORD24-201ENST00000383884 75 ntBASIC9.54□□□□□ -0.88
SENP3Q9H4L4 Y_RNA.386-201ENST00000383913 105 ntBASIC9.54□□□□□ -0.88
SENP3Q9H4L4 MIR1185-2-201ENST00000408687 86 ntBASIC9.54□□□□□ -0.88
SENP3Q9H4L4 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 RNA5SP418-201ENST00000515951 117 ntBASIC9.54□□□□□ -0.88
SENP3Q9H4L4 RPS15AP11-201ENST00000594193 385 ntBASIC9.54□□□□□ -0.88
SENP3Q9H4L4 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 SLC36A2-201ENST00000335244 3421 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
SENP3Q9H4L4 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 SNORA38B-201ENST00000363524 131 ntBASIC9.53□□□□□ -0.88
SENP3Q9H4L4 SNORA58B-201ENST00000364259 136 ntBASIC9.53□□□□□ -0.88
SENP3Q9H4L4 MRM2-202ENST00000407040 582 ntTSL 3 BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 Y_RNA.609-201ENST00000410669 89 ntBASIC9.53□□□□□ -0.88
SENP3Q9H4L4 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 RNA5SP206-201ENST00000516703 121 ntBASIC9.53□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms