Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL133270.1-201ENST00000402635 279 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 NDUFS5P1-201ENST00000405668 289 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 RNU6-1148P-201ENST00000410992 104 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 RPL23AP26-201ENST00000412728 464 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 RPL30P2-201ENST00000414021 291 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 HLA-N-201ENST00000437516 135 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 GAPDHP27-201ENST00000447427 1020 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC073264.2-201ENST00000448886 166 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC116533.1-201ENST00000459748 321 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 RNU6-864P-201ENST00000516256 108 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 RNU6-677P-201ENST00000516914 101 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC069240.1-201ENST00000548774 375 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AL121576.1-201ENST00000556055 276 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 BNIP3P5-201ENST00000562290 498 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC106782.4-201ENST00000568264 210 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC008521.1-201ENST00000587471 187 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 BDH2P1-201ENST00000602288 736 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC092807.2-201ENST00000609367 243 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 SDR42E1P2-201ENST00000614861 481 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AL021997.2-201ENST00000615674 271 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AL589994.2-201ENST00000621124 579 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC005858.4-201ENST00000623191 700 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 RAD17P1-201ENST00000418130 2042 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC066616.2-201ENST00000559334 1481 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 Y_RNA.399-201ENST00000383955 105 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC097374.1-203ENST00000400783 485 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC006466.1-201ENST00000438721 289 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 NEFMP1-201ENST00000443423 1006 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC233279.1-201ENST00000455300 423 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC004801.2-202ENST00000463559 283 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 RPL35AP15-201ENST00000468042 339 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC231760.1-201ENST00000498002 260 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 TTC39CP1-201ENST00000512513 755 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 RN7SKP258-201ENST00000517151 304 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 RNU6-840P-201ENST00000517275 65 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 MIR432-201ENST00000606207 94 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC012409.4-201ENST00000612923 249 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 AC007546.1-201ENST00000619452 559 ntBASIC3.86□□□□□ -1.79
VSX1Q9NZR4 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
VSX1Q9NZR4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC010300.1-201ENST00000600671 5134 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 OR5P1P-201ENST00000299512 925 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC079741.1-201ENST00000321498 212 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 RNA5SP52-201ENST00000362448 134 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 RNA5SP505-201ENST00000364748 108 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 RNU6-701P-201ENST00000384059 107 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 MIR585-201ENST00000384887 94 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms