Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC078817.1-201ENST00000492623 435 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 CCDC34P1-201ENST00000507441 517 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 HIGD1AP13-201ENST00000509878 289 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC112206.3-201ENST00000514578 389 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 RNA5SP497-201ENST00000516081 97 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 RNU6-189P-201ENST00000516120 101 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AL118558.2-201ENST00000556294 238 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 MED28P6-201ENST00000558776 231 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AL356218.2-201ENST00000605264 187 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC103710.3-201ENST00000608157 948 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC034102.8-201ENST00000615146 484 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC091905.2-201ENST00000623143 306 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 MTND1P37-201ENST00000636562 264 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC010300.1-201ENST00000600671 5134 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 RNA5SP167-201ENST00000365461 116 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 Y_RNA.460-201ENST00000384255 102 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 RNU6-393P-201ENST00000384475 107 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 RNU6-831P-201ENST00000384548 107 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 RNU6-14P-201ENST00000384630 106 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 EIF4E2P1-201ENST00000393781 255 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AL583835.1-201ENST00000399570 407 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC092809.3-201ENST00000415453 231 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 TMSB10P2-201ENST00000416049 131 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 RPL21P66-201ENST00000426566 466 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AL732292.1-201ENST00000426692 226 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 MTND1P14-201ENST00000427400 950 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AL590383.1-201ENST00000428602 75 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 HMGB1P18-201ENST00000438801 619 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 PRPS1P1-201ENST00000445305 876 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC087588.1-201ENST00000462203 316 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC083904.1-201ENST00000487828 231 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 MTCO1P29-201ENST00000496868 288 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 OR11H5P-201ENST00000554039 926 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC026464.5-201ENST00000562497 722 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 MIR4284-201ENST00000578924 81 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 MIR3941-201ENST00000582572 103 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC020634.1-201ENST00000608701 549 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 AC107294.1-201ENST00000609524 467 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 MIR1302-1-201ENST00000637932 143 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 OR4G2P-202ENST00000641004 1759 ntBASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
TRIM39Q9HCM9 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 RNA5SP189-201ENST00000364920 115 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 Y_RNA.384-201ENST00000383909 102 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 MIR3065-201ENST00000390137 79 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 SNORD70.1-201ENST00000391007 85 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 U3.22-201ENST00000391120 215 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 HDGFP1-201ENST00000405943 252 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 VDAC1P9-201ENST00000412766 841 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 NDUFA5P4-201ENST00000436704 385 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AF228730.2-201ENST00000438784 848 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC008264.1-201ENST00000447612 367 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC010469.1-201ENST00000463864 576 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 RPS15AP34-201ENST00000487776 387 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AP001086.1-201ENST00000494882 321 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 SNORA31.8-201ENST00000516327 108 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 SCARNA15.2-201ENST00000516409 127 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 RNU6-143P-201ENST00000516942 93 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 ATP5F1P5-201ENST00000526403 760 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC009643.1-201ENST00000532030 391 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms