Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNA5SP129-201ENST00000410276 118 ntBASIC3.83□□□□□ -1.8
CTCFP49711 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.83□□□□□ -1.8
CTCFP49711 EEF1A1P41-201ENST00000414667 207 ntBASIC3.83□□□□□ -1.8
CTCFP49711 BEND7P1-201ENST00000422058 457 ntBASIC3.83□□□□□ -1.8
CTCFP49711 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CTCFP49711 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.83□□□□□ -1.8
CTCFP49711 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.83□□□□□ -1.8
CTCFP49711 AC109583.1-201ENST00000432156 268 ntBASIC3.83□□□□□ -1.8
CTCFP49711 NDUFB1P1-201ENST00000435191 180 ntBASIC3.83□□□□□ -1.8
CTCFP49711 SETP8-201ENST00000435341 628 ntBASIC3.83□□□□□ -1.8
CTCFP49711 TRIM60P18-201ENST00000441518 828 ntBASIC3.83□□□□□ -1.8
CTCFP49711 ATP5C1P1-201ENST00000441945 895 ntBASIC3.83□□□□□ -1.8
CTCFP49711 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.83□□□□□ -1.8
CTCFP49711 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.83□□□□□ -1.8
CTCFP49711 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.83□□□□□ -1.8
CTCFP49711 AC009812.2-201ENST00000517657 457 ntBASIC3.83□□□□□ -1.8
CTCFP49711 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.83□□□□□ -1.8
CTCFP49711 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.83□□□□□ -1.8
CTCFP49711 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.83□□□□□ -1.8
CTCFP49711 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.83□□□□□ -1.8
CTCFP49711 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.83□□□□□ -1.8
CTCFP49711 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.83□□□□□ -1.8
CTCFP49711 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CTCFP49711 PRELID3BP8-201ENST00000604148 295 ntBASIC3.83□□□□□ -1.8
CTCFP49711 AL031775.1-201ENST00000607014 887 ntBASIC3.83□□□□□ -1.8
CTCFP49711 AC091965.4-201ENST00000607691 587 ntBASIC3.83□□□□□ -1.8
CTCFP49711 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.83□□□□□ -1.8
CTCFP49711 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.83□□□□□ -1.8
CTCFP49711 AC092326.2-201ENST00000624772 1561 ntBASIC3.83□□□□□ -1.8
CTCFP49711 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
CTCFP49711 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.83□□□□□ -1.8
CTCFP49711 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CTCFP49711 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CTCFP49711 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
CTCFP49711 AC073073.2-201ENST00000609827 2578 ntBASIC3.82□□□□□ -1.8
CTCFP49711 RNU6-283P-201ENST00000364788 107 ntBASIC3.82□□□□□ -1.8
CTCFP49711 DEFB109C-201ENST00000382575 264 ntBASIC3.82□□□□□ -1.8
CTCFP49711 DEFB109B-201ENST00000382656 264 ntBASIC3.82□□□□□ -1.8
CTCFP49711 SSXP9-201ENST00000417503 292 ntBASIC3.82□□□□□ -1.8
CTCFP49711 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.82□□□□□ -1.8
CTCFP49711 RPL31P12-201ENST00000422587 358 ntBASIC3.82□□□□□ -1.8
CTCFP49711 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.82□□□□□ -1.8
CTCFP49711 RPL37P21-201ENST00000435890 276 ntBASIC3.82□□□□□ -1.8
CTCFP49711 AC118469.1-201ENST00000442943 488 ntBASIC3.82□□□□□ -1.8
CTCFP49711 AC112653.1-201ENST00000443851 386 ntBASIC3.82□□□□□ -1.8
CTCFP49711 BMI1P1-201ENST00000445879 941 ntBASIC3.82□□□□□ -1.8
CTCFP49711 AC108938.1-201ENST00000451204 136 ntBASIC3.82□□□□□ -1.8
CTCFP49711 AL109933.2-201ENST00000452651 260 ntBASIC3.82□□□□□ -1.8
CTCFP49711 snoU13.23-201ENST00000458863 104 ntBASIC3.82□□□□□ -1.8
CTCFP49711 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.82□□□□□ -1.8
CTCFP49711 ARL2BPP6-201ENST00000512757 439 ntBASIC3.82□□□□□ -1.8
CTCFP49711 RNU6-579P-201ENST00000516879 102 ntBASIC3.82□□□□□ -1.8
CTCFP49711 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.82□□□□□ -1.8
CTCFP49711 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.82□□□□□ -1.8
CTCFP49711 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.82□□□□□ -1.8
CTCFP49711 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.82□□□□□ -1.8
CTCFP49711 MIR2682-201ENST00000580305 110 ntBASIC3.82□□□□□ -1.8
CTCFP49711 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.82□□□□□ -1.8
CTCFP49711 AC011451.2-201ENST00000604303 598 ntBASIC3.82□□□□□ -1.8
CTCFP49711 Z94722.1-201ENST00000604328 474 ntBASIC3.82□□□□□ -1.8
CTCFP49711 AL355810.1-201ENST00000614629 552 ntBASIC3.82□□□□□ -1.8
CTCFP49711 AL590808.1-201ENST00000618696 141 ntBASIC3.82□□□□□ -1.8
CTCFP49711 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CTCFP49711 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.82□□□□□ -1.8
CTCFP49711 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
CTCFP49711 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CTCFP49711 MTCO1P9-201ENST00000505577 1534 ntBASIC3.81□□□□□ -1.8
CTCFP49711 MTND5P33-201ENST00000571250 1450 ntBASIC3.81□□□□□ -1.8
CTCFP49711 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.81□□□□□ -1.8
CTCFP49711 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CTCFP49711 ASNSP3-201ENST00000451989 1306 ntBASIC3.81□□□□□ -1.8
CTCFP49711 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.81□□□□□ -1.8
CTCFP49711 SNORD116-1-201ENST00000384335 95 ntBASIC3.81□□□□□ -1.8
CTCFP49711 SKINT1L-201ENST00000401057 817 ntBASIC3.81□□□□□ -1.8
CTCFP49711 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.81□□□□□ -1.8
CTCFP49711 AC244035.1-201ENST00000430042 390 ntBASIC3.81□□□□□ -1.8
CTCFP49711 AL353705.1-201ENST00000433468 480 ntBASIC3.81□□□□□ -1.8
CTCFP49711 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.81□□□□□ -1.8
CTCFP49711 snoU13.15-201ENST00000459407 104 ntBASIC3.81□□□□□ -1.8
CTCFP49711 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.81□□□□□ -1.8
CTCFP49711 AC060788.1-201ENST00000521318 469 ntBASIC3.81□□□□□ -1.8
CTCFP49711 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.81□□□□□ -1.8
CTCFP49711 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.81□□□□□ -1.8
CTCFP49711 AP001029.3-201ENST00000588063 596 ntBASIC3.81□□□□□ -1.8
CTCFP49711 AL590229.1-201ENST00000603497 542 ntBASIC3.81□□□□□ -1.8
CTCFP49711 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.81□□□□□ -1.8
CTCFP49711 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CTCFP49711 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
CTCFP49711 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CTCFP49711 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CTCFP49711 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CTCFP49711 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.81□□□□□ -1.8
CTCFP49711 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.8□□□□□ -1.8
CTCFP49711 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CTCFP49711 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.8□□□□□ -1.8
CTCFP49711 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.8□□□□□ -1.8
CTCFP49711 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CTCFP49711 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CTCFP49711 RNU6-114P-201ENST00000384704 105 ntBASIC3.8□□□□□ -1.8
CTCFP49711 U3.20-201ENST00000390909 217 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms