RNA–Protein interactions for RNA: ENST00000422074.2

LINC00397-201, long intergenic non-protein coding RNA 397, humanhuman

TSL 3 BASIC

Gene LINC00397, Length 344 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00397-201ENST00000422074 AEBP2Q6ZN18 517 aaPredicted RBP25.41■■□□□ 1.66
LINC00397-201ENST00000422074 CHIC1Q5VXU3 224 aa24.61■■□□□ 1.53
LINC00397-201ENST00000422074 PHF23Q9BUL5 403 aaPredicted RBP21.61■■□□□ 1.05
LINC00397-201ENST00000422074 SENP3Q9H4L4 574 aaPredicted RBP21.59■■□□□ 1.05
LINC00397-201ENST00000422074 FOXD1Q16676 465 aa20.06■□□□□ 0.8
LINC00397-201ENST00000422074 PLPPR3Q6T4P5 718 aa19.87■□□□□ 0.77
LINC00397-201ENST00000422074 PPP6R1Q9UPN7 881 aa19.13■□□□□ 0.65
LINC00397-201ENST00000422074 ADRA2BP18089 450 aa19.06■□□□□ 0.64
LINC00397-201ENST00000422074 PIAS4Q8N2W9 510 aaPredicted RBP18.8■□□□□ 0.6
LINC00397-201ENST00000422074 MSH5O43196 834 aa18.6■□□□□ 0.57
LINC00397-201ENST00000422074 SCAF1Q9H7N4 1312 aaKnown RBP17.48■□□□□ 0.39
LINC00397-201ENST00000422074 PPP4R3CPQ6ZMV5 832 aa17.46■□□□□ 0.39
LINC00397-201ENST00000422074 MAPK8IP2Q13387 824 aaPredicted RBP17.36■□□□□ 0.37
LINC00397-201ENST00000422074 POTEDQ86YR6 584 aa17.3■□□□□ 0.36
LINC00397-201ENST00000422074 DMRT2Q9Y5R5 561 aa17.22■□□□□ 0.35
LINC00397-201ENST00000422074 CNKSR2Q8WXI2 1034 aa17.05■□□□□ 0.32
LINC00397-201ENST00000422074 NCBP3Q53F19 620 aaKnown RBP16.94■□□□□ 0.3
LINC00397-201ENST00000422074 HOXD11P31277 338 aaPredicted RBP16.81■□□□□ 0.28
LINC00397-201ENST00000422074 KCNA4P22459 653 aa16.79■□□□□ 0.28
LINC00397-201ENST00000422074 RNF216Q9NWF9 866 aaPredicted RBP16.79■□□□□ 0.28
LINC00397-201ENST00000422074 NPM3O75607 178 aaKnown RBP16.7■□□□□ 0.26
LINC00397-201ENST00000422074 DNAJC5BQ9UF47 199 aa16.43■□□□□ 0.22
LINC00397-201ENST00000422074 DCAF8L1A6NGE4 600 aa16.32■□□□□ 0.2
LINC00397-201ENST00000422074 SLC4A1APQ9BWU0 796 aaKnown RBP15.93■□□□□ 0.14
LINC00397-201ENST00000422074 RNF39Q9H2S5 420 aa15.93■□□□□ 0.14
LINC00397-201ENST00000422074 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.9■□□□□ 0.14
LINC00397-201ENST00000422074 SLC4A2P04920 1241 aa15.85■□□□□ 0.13
LINC00397-201ENST00000422074 C1QBPQ07021 282 aaKnown RBP15.73■□□□□ 0.11
LINC00397-201ENST00000422074 U3KPZ7 1027 aaPredicted RBP15.68■□□□□ 0.1
LINC00397-201ENST00000422074 CACNB1Q02641 598 aaPredicted RBP15.59■□□□□ 0.09
LINC00397-201ENST00000422074 FOXD4L1Q9NU39 408 aa15.53■□□□□ 0.08
LINC00397-201ENST00000422074 ZBTB22O15209 634 aa15.46■□□□□ 0.07
LINC00397-201ENST00000422074 MYCNP04198 464 aaPredicted RBP15.44■□□□□ 0.06
LINC00397-201ENST00000422074 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.41■□□□□ 0.06
LINC00397-201ENST00000422074 HNRNPUL2Q1KMD3 747 aaKnown RBP15.41■□□□□ 0.06
LINC00397-201ENST00000422074 SAMD1Q6SPF0 538 aaPredicted RBP15.34■□□□□ 0.05
LINC00397-201ENST00000422074 APLP2Q06481 763 aa15.29■□□□□ 0.04
LINC00397-201ENST00000422074 SPINK5Q9NQ38 1064 aaPredicted RBP15.27■□□□□ 0.04
LINC00397-201ENST00000422074 CSRNP3Q8WYN3 585 aa15.2■□□□□ 0.02
LINC00397-201ENST00000422074 CAPN15O75808 1086 aa15.18■□□□□ 0.02
LINC00397-201ENST00000422074 EHMT2Q96KQ7 1210 aa15.13■□□□□ 0.01
LINC00397-201ENST00000422074 ZNF219Q9P2Y4 722 aaPredicted RBP15.12■□□□□ 0.01
LINC00397-201ENST00000422074 ATXN8OSP0DMR3 200 aa15.08■□□□□ 0
LINC00397-201ENST00000422074 DSG3P32926 999 aa15.06■□□□□ 0
LINC00397-201ENST00000422074 TRHP20396 242 aaPredicted RBP15.05■□□□□ -0
LINC00397-201ENST00000422074 ATF5Q9Y2D1 282 aaPredicted RBP15.02■□□□□ -0
LINC00397-201ENST00000422074 ABCB7O75027 752 aa14.85□□□□□ -0.03
LINC00397-201ENST00000422074 POLA2Q14181 598 aa14.8□□□□□ -0.04
LINC00397-201ENST00000422074 ZBTB12Q9Y330 459 aaPredicted RBP14.58□□□□□ -0.08
LINC00397-201ENST00000422074 FBLN2P98095 1184 aa14.39□□□□□ -0.11
LINC00397-201ENST00000422074 MKRN4PQ13434 485 aaPredicted RBP14.39□□□□□ -0.11
LINC00397-201ENST00000422074 RBM42Q9BTD8 480 aaKnown RBP14.35□□□□□ -0.11
LINC00397-201ENST00000422074 OSCARQ8IYS5 282 aa14.28□□□□□ -0.12
LINC00397-201ENST00000422074 SPDYE2BA6NHP3 402 aa14.17□□□□□ -0.14
LINC00397-201ENST00000422074 SPDYE6P0CI01 402 aa14.17□□□□□ -0.14
LINC00397-201ENST00000422074 SPDYE2Q495Y8 402 aa14.17□□□□□ -0.14
LINC00397-201ENST00000422074 AKT1S1Q96B36 256 aa14.14□□□□□ -0.15
LINC00397-201ENST00000422074 SSUH2Q9Y2M2 353 aa14.07□□□□□ -0.16
LINC00397-201ENST00000422074 ZNF692Q9BU19 519 aaPredicted RBP14.03□□□□□ -0.16
LINC00397-201ENST00000422074 REM2Q8IYK8 340 aaPredicted RBP13.99□□□□□ -0.17
LINC00397-201ENST00000422074 SPDYE4A6NLX3 237 aa13.91□□□□□ -0.18
LINC00397-201ENST00000422074 CHRDL2Q6WN34 429 aa13.83□□□□□ -0.2
LINC00397-201ENST00000422074 PABPN1Q86U42 306 aaKnown RBP eCLIP13.83□□□□□ -0.2
LINC00397-201ENST00000422074 PITPNM1O00562 1244 aa13.81□□□□□ -0.2
LINC00397-201ENST00000422074 SPDYE1Q8NFV5 336 aaPredicted RBP13.79□□□□□ -0.2
LINC00397-201ENST00000422074 PROM2Q8N271 834 aa13.77□□□□□ -0.21
LINC00397-201ENST00000422074 FKBP8Q14318 412 aa13.68□□□□□ -0.22
LINC00397-201ENST00000422074 FXR2P51116 673 aaKnown RBP eCLIP13.65□□□□□ -0.22
LINC00397-201ENST00000422074 CLEC11AQ9Y240 323 aa13.65□□□□□ -0.22
LINC00397-201ENST00000422074 POTEHQ6S545 545 aa13.64□□□□□ -0.23
LINC00397-201ENST00000422074 STAG3Q9UJ98 1225 aa13.61□□□□□ -0.23
LINC00397-201ENST00000422074 PIP4P2Q8N4L2 257 aa13.6□□□□□ -0.23
LINC00397-201ENST00000422074 PRR29P0C7W0 189 aa13.54□□□□□ -0.24
LINC00397-201ENST00000422074 PRKAR2AP13861 404 aaKnown RBP13.43□□□□□ -0.26
LINC00397-201ENST00000422074 CREBZFQ9NS37 354 aa13.37□□□□□ -0.27
LINC00397-201ENST00000422074 CHADLQ6NUI6 762 aa13.36□□□□□ -0.27
LINC00397-201ENST00000422074 FBXO3Q9UK99 471 aa13.31□□□□□ -0.28
LINC00397-201ENST00000422074 FARP1Q9Y4F1 1045 aaPredicted RBP13.28□□□□□ -0.28
LINC00397-201ENST00000422074 MNX1P50219 401 aaPredicted RBP13.25□□□□□ -0.29
LINC00397-201ENST00000422074 C19orf67A6NJJ6 358 aa13.19□□□□□ -0.3
LINC00397-201ENST00000422074 MIER1Q8N108 512 aa13.18□□□□□ -0.3
LINC00397-201ENST00000422074 HAX1O00165 279 aa13.17□□□□□ -0.3
LINC00397-201ENST00000422074 PLEKHG5O94827 1062 aa13.13□□□□□ -0.31
LINC00397-201ENST00000422074 NPM1P06748 294 aaKnown RBP eCLIP13.12□□□□□ -0.31
LINC00397-201ENST00000422074 VASPP50552 380 aaPredicted RBP13.12□□□□□ -0.31
LINC00397-201ENST00000422074 PLCD3Q8N3E9 789 aa13.12□□□□□ -0.31
LINC00397-201ENST00000422074 EVX2Q03828 476 aa13.1□□□□□ -0.31
LINC00397-201ENST00000422074 ZBTB47Q9UFB7 747 aaPredicted RBP13.06□□□□□ -0.32
LINC00397-201ENST00000422074 CD44P16070 742 aaKnown RBP13.04□□□□□ -0.32
LINC00397-201ENST00000422074 SP7Q8TDD2 431 aaPredicted RBP13.03□□□□□ -0.32
LINC00397-201ENST00000422074 NUBP1P53384 320 aa12.95□□□□□ -0.34
LINC00397-201ENST00000422074 IFNLR1Q8IU57 520 aaPredicted RBP12.94□□□□□ -0.34
LINC00397-201ENST00000422074 ZNF579Q8NAF0 562 aaKnown RBP12.93□□□□□ -0.34
LINC00397-201ENST00000422074 PAK3O75914 559 aaPredicted RBP12.92□□□□□ -0.34
LINC00397-201ENST00000422074 ZRANB1Q9UGI0 708 aa12.92□□□□□ -0.34
LINC00397-201ENST00000422074 RASEFQ8IZ41 740 aa12.91□□□□□ -0.34
LINC00397-201ENST00000422074 CLCN6P51797 869 aa12.9□□□□□ -0.34
LINC00397-201ENST00000422074 KLHL34Q8N239 644 aa12.88□□□□□ -0.35
LINC00397-201ENST00000422074 CCDC61Q9Y6R9 512 aa12.85□□□□□ -0.35
LINC00397-201ENST00000422074 GABBR2O75899 941 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms