Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC139495.1-202ENST00000513164 354 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 APOOP4-201ENST00000513530 597 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 SNORD27.1-201ENST00000516319 72 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 ADI1P3-201ENST00000549509 470 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 ZNF519P2-201ENST00000557032 169 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC022655.2-201ENST00000577280 318 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 AL161729.3-201ENST00000603533 673 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 BNIP3P9-201ENST00000603714 553 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC098826.3-201ENST00000603823 466 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AL356218.2-201ENST00000605264 187 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 uc_338.11-201ENST00000619132 160 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC025034.2-201ENST00000623264 286 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 SEPT14P19-203ENST00000633205 211 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC027514.1-201ENST00000588561 1603 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
DDX56Q9NY93 LARP1BP1-201ENST00000506036 1359 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
DDX56Q9NY93 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
DDX56Q9NY93 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
DDX56Q9NY93 RNU6-288P-201ENST00000363690 104 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 Y_RNA.481-201ENST00000384373 102 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 RNU6-14P-201ENST00000384630 106 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 RNU6-606P-201ENST00000384721 111 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 MIR1-2-201ENST00000384961 85 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 MTCO3P40-201ENST00000392516 676 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 RNU6-648P-201ENST00000410190 107 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 RPS12P24-201ENST00000412619 387 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 AL109913.1-201ENST00000421173 514 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 AC012498.1-201ENST00000424037 437 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 AL591212.2-201ENST00000433923 257 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 RPL23AP20-201ENST00000447965 421 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 RNU7-182P-201ENST00000459009 62 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 AC093824.1-201ENST00000508796 343 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 AC099522.1-202ENST00000514718 367 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 RNU7-143P-201ENST00000516781 65 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 AC016957.1-201ENST00000534895 309 ntBASIC4.3□□□□□ -1.72
DDX56Q9NY93 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
DDX56Q9NY93 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
DDX56Q9NY93 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
DDX56Q9NY93 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.3□□□□□ -1.72
DDX56Q9NY93 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
DDX56Q9NY93 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
DDX56Q9NY93 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
DDX56Q9NY93 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.29□□□□□ -1.72
DDX56Q9NY93 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
DDX56Q9NY93 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
DDX56Q9NY93 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
DDX56Q9NY93 SNORA24.1-201ENST00000384401 135 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 RPL21P17-201ENST00000397467 475 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
DDX56Q9NY93 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC4.29□□□□□ -1.72
DDX56Q9NY93 GPM6BP2-201ENST00000432046 144 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.29□□□□□ -1.72
DDX56Q9NY93 AC006011.1-201ENST00000442758 349 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 GPM6BP1-201ENST00000446387 144 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 RN7SL303P-201ENST00000469773 251 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 AC012181.1-201ENST00000479895 423 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 RN7SL271P-201ENST00000487601 295 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 RPS15AP34-201ENST00000487776 387 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 RPL29P14-201ENST00000495837 428 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 AP001893.2-201ENST00000526949 202 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.29□□□□□ -1.72
DDX56Q9NY93 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.29□□□□□ -1.72
DDX56Q9NY93 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.29□□□□□ -1.72
DDX56Q9NY93 AL161798.1-201ENST00000604630 131 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 AC128687.2-201ENST00000609657 566 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 RN7SL722P-201ENST00000617780 284 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 RN7SL565P-201ENST00000618246 284 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 AC103858.2-201ENST00000621471 543 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 PLCE1P1-201ENST00000622094 305 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 MIR4727-201ENST00000622232 55 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 AP000346.3-201ENST00000622821 210 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 AL773545.4-201ENST00000637262 310 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 AL513478.4-201ENST00000641636 310 ntBASIC4.29□□□□□ -1.72
DDX56Q9NY93 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
DDX56Q9NY93 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
DDX56Q9NY93 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 203.3 ms