Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USB1Q9BQ65 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USB1Q9BQ65 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
USB1Q9BQ65 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USB1Q9BQ65 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
USB1Q9BQ65 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
USB1Q9BQ65 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.48□□□□□ -1.53
USB1Q9BQ65 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.48□□□□□ -1.53
USB1Q9BQ65 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
USB1Q9BQ65 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USB1Q9BQ65 U3.7-201ENST00000363668 216 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 RNU6-1074P-201ENST00000383995 104 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 MIR514A1-201ENST00000385133 98 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 SNORA40C-201ENST00000391285 128 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
USB1Q9BQ65 RNU6-257P-201ENST00000410238 98 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 RNA5SP431-201ENST00000410312 120 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 RAB9AP3-201ENST00000412737 573 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.48□□□□□ -1.53
USB1Q9BQ65 AC007568.1-201ENST00000422912 471 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 AC007560.1-201ENST00000426912 237 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 AL138899.2-201ENST00000439139 499 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 RPL12P11-201ENST00000439970 501 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 RAB9AP1-201ENST00000449393 573 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 SNORD116-25-201ENST00000516517 92 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 RNU6-919P-201ENST00000516731 104 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 SNORA31.19-201ENST00000517079 126 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC5.48□□□□□ -1.53
USB1Q9BQ65 KLKP1-201ENST00000595979 403 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.48□□□□□ -1.53
USB1Q9BQ65 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USB1Q9BQ65 AC138965.3-201ENST00000623875 498 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USB1Q9BQ65 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USB1Q9BQ65 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USB1Q9BQ65 ADAM24P-201ENST00000398655 2101 ntBASIC5.48□□□□□ -1.53
USB1Q9BQ65 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USB1Q9BQ65 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.48□□□□□ -1.53
USB1Q9BQ65 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USB1Q9BQ65 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 Y_RNA.217-201ENST00000364214 105 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 Y_RNA.230-201ENST00000364348 109 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 RNU6-312P-201ENST00000364629 107 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 Y_RNA.261-201ENST00000364631 102 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 Y_RNA.331-201ENST00000365267 102 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 TBCAP2-201ENST00000416175 326 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 COX6B1P7-201ENST00000430845 235 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 CKS1BP5-201ENST00000434172 273 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC124916.1-201ENST00000444020 547 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC096638.1-201ENST00000444678 216 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC009237.7-201ENST00000447357 229 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 RPL23AP3-201ENST00000453844 468 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 Y_RNA.641-201ENST00000459414 105 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 SNORA40.9-201ENST00000515895 93 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 RNA5SP206-201ENST00000516703 121 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 AL121603.1-201ENST00000553815 142 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC008507.3-201ENST00000585753 472 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 BPIFA4P-203ENST00000603168 689 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC092266.1-201ENST00000610958 165 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC005296.1-201ENST00000616145 209 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC245014.3-201ENST00000618589 347 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC000095.2-202ENST00000637415 154 ntBASIC5.47□□□□□ -1.53
USB1Q9BQ65 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USB1Q9BQ65 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.47□□□□□ -1.53
USB1Q9BQ65 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.46□□□□□ -1.54
USB1Q9BQ65 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.46□□□□□ -1.54
USB1Q9BQ65 RNU6-653P-201ENST00000363074 106 ntBASIC5.46□□□□□ -1.54
USB1Q9BQ65 RNU1-49P-201ENST00000363468 159 ntBASIC5.46□□□□□ -1.54
USB1Q9BQ65 Y_RNA.245-201ENST00000364493 95 ntBASIC5.46□□□□□ -1.54
USB1Q9BQ65 Y_RNA.357-201ENST00000365487 109 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms