Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 AC004938.1-201ENST00000438468 308 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 REREP2Y-201ENST00000439103 200 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AC011753.3-201ENST00000443436 406 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.89□□□□□ -1.63
COL8A1P27658 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC4.89□□□□□ -1.63
COL8A1P27658 RPS27AP3-201ENST00000453803 454 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 RN7SL354P-201ENST00000469282 294 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AC091959.1-201ENST00000495857 238 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AC093815.1-201ENST00000508637 280 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.89□□□□□ -1.63
COL8A1P27658 MTND3P25-201ENST00000509243 135 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 RNU6-941P-201ENST00000516346 108 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AP001284.1-201ENST00000528393 2118 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AC067852.3-201ENST00000589177 561 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AC067852.4-201ENST00000590314 478 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AL020997.2-201ENST00000602607 184 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
COL8A1P27658 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC4.89□□□□□ -1.63
COL8A1P27658 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
COL8A1P27658 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.89□□□□□ -1.63
COL8A1P27658 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC4.89□□□□□ -1.63
COL8A1P27658 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC4.89□□□□□ -1.63
COL8A1P27658 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC4.88□□□□□ -1.63
COL8A1P27658 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 AC239868.2-201ENST00000564237 4527 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
COL8A1P27658 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC4.88□□□□□ -1.63
COL8A1P27658 AL445487.1-201ENST00000415694 1580 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL8A1P27658 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 RNU1-130P-201ENST00000363930 160 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 RNU6-818P-201ENST00000364837 108 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 Y_RNA.571-201ENST00000384753 98 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL8A1P27658 RNA5SP339-201ENST00000390987 122 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 AL357139.1-201ENST00000407792 426 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 HCG14-201ENST00000444986 413 ntTSL 2 BASIC4.88□□□□□ -1.63
COL8A1P27658 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.88□□□□□ -1.63
COL8A1P27658 AL162389.1-201ENST00000449233 177 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.88□□□□□ -1.63
COL8A1P27658 U8.21-201ENST00000459536 136 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 RN7SL570P-201ENST00000484405 292 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 RN7SL447P-201ENST00000494711 245 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.88□□□□□ -1.63
COL8A1P27658 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.88□□□□□ -1.63
COL8A1P27658 ANXA2P1-201ENST00000505539 926 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 RNU6-1234P-201ENST00000516877 103 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.88□□□□□ -1.63
COL8A1P27658 AC008873.1-201ENST00000625051 138 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 CYP4F35P-202ENST00000636121 390 ntBASIC4.88□□□□□ -1.63
COL8A1P27658 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL8A1P27658 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.88□□□□□ -1.63
COL8A1P27658 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL8A1P27658 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC4.87□□□□□ -1.63
COL8A1P27658 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL8A1P27658 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC4.87□□□□□ -1.63
COL8A1P27658 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL8A1P27658 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL8A1P27658 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
COL8A1P27658 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC4.87□□□□□ -1.63
COL8A1P27658 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL8A1P27658 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.87□□□□□ -1.63
COL8A1P27658 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL8A1P27658 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.87□□□□□ -1.63
COL8A1P27658 RNVU1-6-201ENST00000364688 164 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL8A1P27658 RPS16P5-201ENST00000406501 404 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 RPL17P36-201ENST00000420302 549 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 RPL12P17-201ENST00000432393 498 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 CEACAMP1-201ENST00000434624 1035 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.87□□□□□ -1.63
COL8A1P27658 AC005002.2-201ENST00000438228 269 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 AL360271.2-201ENST00000447710 161 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.87□□□□□ -1.63
COL8A1P27658 AC234775.1-201ENST00000454247 670 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 RPS4XP22-201ENST00000480755 780 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 RPL23AP40-201ENST00000487630 390 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 AL160314.1-201ENST00000490836 438 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.87□□□□□ -1.63
COL8A1P27658 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms