Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.4
SHROOM4Q9ULL8 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC36.32■■■■□ 3.4
SHROOM4Q9ULL8 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC36.32■■■■□ 3.4
SHROOM4Q9ULL8 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC36.32■■■■□ 3.4
SHROOM4Q9ULL8 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC36.32■■■■□ 3.4
SHROOM4Q9ULL8 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 SLC25A6P4-201ENST00000586535 553 ntBASIC36.31■■■■□ 3.4
SHROOM4Q9ULL8 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 KRT8P11-201ENST00000409686 1436 ntBASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 NUS1P1-201ENST00000446295 882 ntBASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC36.3■■■■□ 3.4
SHROOM4Q9ULL8 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 TBCB-205ENST00000585746 875 ntTSL 3 BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC36.29■■■■□ 3.4
SHROOM4Q9ULL8 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 PCDHAC2-203ENST00000615316 3011 ntBASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 PPIH-202ENST00000372549 327 ntTSL 3 BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC36.28■■■■□ 3.4
SHROOM4Q9ULL8 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 TSSC2-201ENST00000450217 709 ntBASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC36.27■■■■□ 3.4
SHROOM4Q9ULL8 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 AP002383.4-201ENST00000442518 975 ntBASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC36.26■■■■□ 3.4
SHROOM4Q9ULL8 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC36.26■■■■□ 3.39
SHROOM4Q9ULL8 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC36.26■■■■□ 3.39
SHROOM4Q9ULL8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC36.26■■■■□ 3.39
SHROOM4Q9ULL8 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC36.26■■■■□ 3.39
SHROOM4Q9ULL8 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC36.26■■■■□ 3.39
SHROOM4Q9ULL8 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC36.25■■■■□ 3.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms