Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.46■□□□□ 0.87
SIX4Q9UIU6 AC092338.2-201ENST00000568827 1415 ntBASIC20.46■□□□□ 0.87
SIX4Q9UIU6 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 SLC25A1P2-201ENST00000430693 912 ntBASIC20.46■□□□□ 0.87
SIX4Q9UIU6 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.46■□□□□ 0.87
SIX4Q9UIU6 CA15P1-201ENST00000481698 905 ntBASIC20.46■□□□□ 0.87
SIX4Q9UIU6 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 LINC01023-201ENST00000606054 436 ntBASIC20.46■□□□□ 0.87
SIX4Q9UIU6 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX4Q9UIU6 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.45■□□□□ 0.87
SIX4Q9UIU6 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.45■□□□□ 0.86
SIX4Q9UIU6 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SIX4Q9UIU6 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.45■□□□□ 0.86
SIX4Q9UIU6 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.45■□□□□ 0.86
SIX4Q9UIU6 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SIX4Q9UIU6 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SIX4Q9UIU6 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.45■□□□□ 0.86
SIX4Q9UIU6 FP475955.4-201ENST00000623131 1990 ntBASIC20.45■□□□□ 0.86
SIX4Q9UIU6 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 FAM87A-204ENST00000613235 858 ntBASIC20.44■□□□□ 0.86
SIX4Q9UIU6 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SIX4Q9UIU6 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 AC007663.1-201ENST00000438948 1240 ntBASIC20.43■□□□□ 0.86
SIX4Q9UIU6 ECEL1P2-202ENST00000465689 757 ntBASIC20.43■□□□□ 0.86
SIX4Q9UIU6 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 AL353719.1-201ENST00000566847 864 ntBASIC20.43■□□□□ 0.86
SIX4Q9UIU6 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 AC008622.2-201ENST00000617006 1229 ntBASIC20.43■□□□□ 0.86
SIX4Q9UIU6 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 AL161938.1-201ENST00000569833 2180 ntBASIC20.43■□□□□ 0.86
SIX4Q9UIU6 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
SIX4Q9UIU6 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 AC116562.4-202ENST00000641738 218 ntBASIC20.42■□□□□ 0.86
SIX4Q9UIU6 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 KRT18P22-201ENST00000402024 1347 ntBASIC20.42■□□□□ 0.86
SIX4Q9UIU6 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 AL049812.1-201ENST00000432563 2267 ntBASIC20.42■□□□□ 0.86
SIX4Q9UIU6 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SIX4Q9UIU6 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms