Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 AK4P3-201ENST00000418260 669 ntBASIC17.53■□□□□ 0.4
LRFN1Q9P244 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 PCDHAC2-203ENST00000615316 3011 ntBASIC17.53■□□□□ 0.4
LRFN1Q9P244 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LRFN1Q9P244 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LRFN1Q9P244 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 AL138966.2-201ENST00000621997 464 ntBASIC17.52■□□□□ 0.4
LRFN1Q9P244 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.52■□□□□ 0.4
LRFN1Q9P244 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LRFN1Q9P244 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRFN1Q9P244 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LRFN1Q9P244 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRFN1Q9P244 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.52■□□□□ 0.39
LRFN1Q9P244 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 SDHAP1-207ENST00000440850 2000 ntBASIC17.51■□□□□ 0.39
LRFN1Q9P244 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 AP003041.3-201ENST00000527151 707 ntBASIC17.51■□□□□ 0.39
LRFN1Q9P244 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.51■□□□□ 0.39
LRFN1Q9P244 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRFN1Q9P244 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.5■□□□□ 0.39
LRFN1Q9P244 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRFN1Q9P244 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRFN1Q9P244 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LRFN1Q9P244 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.5■□□□□ 0.39
LRFN1Q9P244 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRFN1Q9P244 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms