Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDH9Q9HC56 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDH9Q9HC56 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PCDH9Q9HC56 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.75■□□□□ 0.75
PCDH9Q9HC56 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.75■□□□□ 0.75
PCDH9Q9HC56 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
PCDH9Q9HC56 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
PCDH9Q9HC56 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 TUBB8P6-201ENST00000436895 1288 ntBASIC19.74■□□□□ 0.75
PCDH9Q9HC56 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 AC004264.1-201ENST00000608354 794 ntBASIC19.74■□□□□ 0.75
PCDH9Q9HC56 AC110285.5-201ENST00000611501 352 ntBASIC19.74■□□□□ 0.75
PCDH9Q9HC56 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 TMEM191A-211ENST00000637163 1067 ntBASIC19.74■□□□□ 0.75
PCDH9Q9HC56 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PCDH9Q9HC56 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 AC098590.1-201ENST00000468126 897 ntBASIC19.73■□□□□ 0.75
PCDH9Q9HC56 AL359736.2-201ENST00000621992 437 ntBASIC19.73■□□□□ 0.75
PCDH9Q9HC56 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.73■□□□□ 0.75
PCDH9Q9HC56 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.73■□□□□ 0.75
PCDH9Q9HC56 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 AC142381.4-202ENST00000563973 229 ntBASIC19.72■□□□□ 0.75
PCDH9Q9HC56 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 FAM197Y4-202ENST00000622692 608 ntBASIC19.72■□□□□ 0.75
PCDH9Q9HC56 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 Z98044.1-201ENST00000632503 1764 ntBASIC19.72■□□□□ 0.75
PCDH9Q9HC56 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDH9Q9HC56 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms