Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 CRYGFP-201ENST00000418459 633 ntBASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 AL390955.1-201ENST00000428694 934 ntBASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
PTCHD1Q96NR3 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PTCHD1Q96NR3 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 FITM1-202ENST00000559294 800 ntBASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 AC093484.2-201ENST00000580996 2166 ntBASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTCHD1Q96NR3 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 AC087499.1-201ENST00000418141 1075 ntBASIC18■□□□□ 0.47
PTCHD1Q96NR3 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTCHD1Q96NR3 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 Z82202.1-201ENST00000623446 1880 ntBASIC18■□□□□ 0.47
PTCHD1Q96NR3 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18■□□□□ 0.47
PTCHD1Q96NR3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms