Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
PRKDCP78527 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC13.85□□□□□ -0.19
PRKDCP78527 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 MIR1199-201ENST00000621445 119 ntBASIC13.85□□□□□ -0.19
PRKDCP78527 ORC5-208ENST00000626700 344 ntTSL 3 BASIC13.85□□□□□ -0.19
PRKDCP78527 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 UBC-206ENST00000538617 1303 ntTSL 5 BASIC13.85□□□□□ -0.19
PRKDCP78527 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
PRKDCP78527 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC13.85□□□□□ -0.19
PRKDCP78527 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
PRKDCP78527 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
PRKDCP78527 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC13.85□□□□□ -0.19
PRKDCP78527 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC13.85□□□□□ -0.19
PRKDCP78527 AL024507.2-201ENST00000606070 2574 ntBASIC13.85□□□□□ -0.19
PRKDCP78527 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
PRKDCP78527 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PRKDCP78527 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC13.84□□□□□ -0.19
PRKDCP78527 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.84□□□□□ -0.19
PRKDCP78527 AL592071.1-201ENST00000611956 408 ntBASIC13.84□□□□□ -0.19
PRKDCP78527 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.84□□□□□ -0.19
PRKDCP78527 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC13.84□□□□□ -0.19
PRKDCP78527 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.84□□□□□ -0.19
PRKDCP78527 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC13.84□□□□□ -0.19
PRKDCP78527 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC13.84□□□□□ -0.19
PRKDCP78527 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.84□□□□□ -0.19
PRKDCP78527 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
PRKDCP78527 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PRKDCP78527 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
PRKDCP78527 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
PRKDCP78527 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC13.83□□□□□ -0.19
PRKDCP78527 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
PRKDCP78527 AC112482.1-201ENST00000492080 688 ntBASIC13.83□□□□□ -0.19
PRKDCP78527 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC13.83□□□□□ -0.19
PRKDCP78527 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC13.83□□□□□ -0.19
PRKDCP78527 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC13.83□□□□□ -0.19
PRKDCP78527 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
PRKDCP78527 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.83□□□□□ -0.19
PRKDCP78527 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC13.83□□□□□ -0.19
PRKDCP78527 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
PRKDCP78527 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
PRKDCP78527 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
PRKDCP78527 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.83□□□□□ -0.2
PRKDCP78527 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
PRKDCP78527 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC13.83□□□□□ -0.2
PRKDCP78527 AC145285.3-201ENST00000564603 959 ntBASIC13.83□□□□□ -0.2
PRKDCP78527 AC005336.2-201ENST00000593183 939 ntBASIC13.83□□□□□ -0.2
PRKDCP78527 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC13.83□□□□□ -0.2
PRKDCP78527 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC13.83□□□□□ -0.2
PRKDCP78527 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
PRKDCP78527 RPS8P6-201ENST00000426177 609 ntBASIC13.83□□□□□ -0.2
PRKDCP78527 LINC01711-201ENST00000598340 967 ntBASIC13.83□□□□□ -0.2
PRKDCP78527 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC13.83□□□□□ -0.2
PRKDCP78527 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PRKDCP78527 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 FEM1AP1-201ENST00000431297 1995 ntBASIC13.82□□□□□ -0.2
PRKDCP78527 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
PRKDCP78527 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC13.82□□□□□ -0.2
PRKDCP78527 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.82□□□□□ -0.2
PRKDCP78527 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.82□□□□□ -0.2
PRKDCP78527 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms