Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 ANKRD18DP-204ENST00000455355 1975 ntBASIC15.4■□□□□ 0.06
CX3CL1P78423 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC15.4■□□□□ 0.06
CX3CL1P78423 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
CX3CL1P78423 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CX3CL1P78423 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CX3CL1P78423 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 AC093503.3-201ENST00000624917 2352 ntBASIC15.39■□□□□ 0.05
CX3CL1P78423 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.39■□□□□ 0.05
CX3CL1P78423 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CX3CL1P78423 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
CX3CL1P78423 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
CX3CL1P78423 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
CX3CL1P78423 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 C1QL1P1-201ENST00000568105 661 ntBASIC15.39■□□□□ 0.05
CX3CL1P78423 FAM197Y4-202ENST00000622692 608 ntBASIC15.39■□□□□ 0.05
CX3CL1P78423 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.39■□□□□ 0.05
CX3CL1P78423 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.39■□□□□ 0.05
CX3CL1P78423 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 ZNF815P-204ENST00000434898 1737 ntBASIC15.39■□□□□ 0.05
CX3CL1P78423 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.39■□□□□ 0.05
CX3CL1P78423 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CX3CL1P78423 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CX3CL1P78423 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
CX3CL1P78423 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
CX3CL1P78423 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC15.38■□□□□ 0.05
CX3CL1P78423 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
CX3CL1P78423 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC15.38■□□□□ 0.05
CX3CL1P78423 Z82202.1-201ENST00000623446 1880 ntBASIC15.38■□□□□ 0.05
CX3CL1P78423 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.38■□□□□ 0.05
CX3CL1P78423 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC15.38■□□□□ 0.05
CX3CL1P78423 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.38■□□□□ 0.05
CX3CL1P78423 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC15.38■□□□□ 0.05
CX3CL1P78423 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.38■□□□□ 0.05
CX3CL1P78423 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.38■□□□□ 0.05
CX3CL1P78423 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC15.38■□□□□ 0.05
CX3CL1P78423 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CX3CL1P78423 AL359736.2-201ENST00000621992 437 ntBASIC15.38■□□□□ 0.05
CX3CL1P78423 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15.38■□□□□ 0.05
CX3CL1P78423 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.38■□□□□ 0.05
CX3CL1P78423 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
CX3CL1P78423 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CX3CL1P78423 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CX3CL1P78423 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CX3CL1P78423 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
CX3CL1P78423 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CX3CL1P78423 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CX3CL1P78423 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.37■□□□□ 0.05
CX3CL1P78423 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CX3CL1P78423 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.37■□□□□ 0.05
CX3CL1P78423 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CX3CL1P78423 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 AC142381.4-202ENST00000563973 229 ntBASIC15.37■□□□□ 0.05
CX3CL1P78423 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC15.37■□□□□ 0.05
CX3CL1P78423 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC15.37■□□□□ 0.05
CX3CL1P78423 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CX3CL1P78423 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CX3CL1P78423 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms