Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RNF4P78317 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
RNF4P78317 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.7■□□□□ 0.42
RNF4P78317 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.7■□□□□ 0.42
RNF4P78317 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.7■□□□□ 0.42
RNF4P78317 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.7■□□□□ 0.42
RNF4P78317 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
RNF4P78317 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RNF4P78317 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.7■□□□□ 0.42
RNF4P78317 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.7■□□□□ 0.42
RNF4P78317 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.7■□□□□ 0.42
RNF4P78317 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
RNF4P78317 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RNF4P78317 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.69■□□□□ 0.42
RNF4P78317 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
RNF4P78317 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 ECEL1P3-201ENST00000427961 737 ntBASIC17.69■□□□□ 0.42
RNF4P78317 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.69■□□□□ 0.42
RNF4P78317 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RNF4P78317 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.69■□□□□ 0.42
RNF4P78317 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
RNF4P78317 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.69■□□□□ 0.42
RNF4P78317 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.69■□□□□ 0.42
RNF4P78317 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
RNF4P78317 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
RNF4P78317 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.69■□□□□ 0.42
RNF4P78317 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.69■□□□□ 0.42
RNF4P78317 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.69■□□□□ 0.42
RNF4P78317 AC007952.6-201ENST00000573168 2673 ntBASIC17.69■□□□□ 0.42
RNF4P78317 AC003957.1-201ENST00000625108 2673 ntBASIC17.69■□□□□ 0.42
RNF4P78317 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
RNF4P78317 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
RNF4P78317 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF4P78317 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF4P78317 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
RNF4P78317 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
RNF4P78317 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RNF4P78317 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF4P78317 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.68■□□□□ 0.42
RNF4P78317 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 AC145285.6-201ENST00000604632 637 ntBASIC17.68■□□□□ 0.42
RNF4P78317 AC012306.2-201ENST00000609350 630 ntBASIC17.68■□□□□ 0.42
RNF4P78317 AC097493.4-201ENST00000641197 219 ntBASIC17.68■□□□□ 0.42
RNF4P78317 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RNF4P78317 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF4P78317 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF4P78317 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
RNF4P78317 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF4P78317 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
RNF4P78317 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RNF4P78317 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.68■□□□□ 0.42
RNF4P78317 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RNF4P78317 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF4P78317 LINC01568-207ENST00000641790 1380 ntBASIC17.67■□□□□ 0.42
RNF4P78317 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF4P78317 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF4P78317 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF4P78317 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RNF4P78317 TSPY14P-201ENST00000303979 915 ntBASIC17.67■□□□□ 0.42
RNF4P78317 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF4P78317 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
RNF4P78317 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF4P78317 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF4P78317 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RNF4P78317 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF4P78317 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.67■□□□□ 0.42
RNF4P78317 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RNF4P78317 EGLN1P1-201ENST00000531623 762 ntBASIC17.67■□□□□ 0.42
RNF4P78317 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF4P78317 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.67■□□□□ 0.42
RNF4P78317 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.67■□□□□ 0.42
RNF4P78317 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.67■□□□□ 0.42
RNF4P78317 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF4P78317 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.67■□□□□ 0.42
RNF4P78317 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.67■□□□□ 0.42
RNF4P78317 AL032819.2-201ENST00000624543 2162 ntBASIC17.67■□□□□ 0.42
RNF4P78317 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF4P78317 TEX21P-204ENST00000641479 1693 ntBASIC17.67■□□□□ 0.42
RNF4P78317 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF4P78317 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms