Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.97■□□□□ 0.79
HDAC4P56524 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
HDAC4P56524 FAM197Y1-201ENST00000421178 764 ntBASIC19.97■□□□□ 0.79
HDAC4P56524 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.97■□□□□ 0.79
HDAC4P56524 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.97■□□□□ 0.79
HDAC4P56524 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
HDAC4P56524 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.97■□□□□ 0.79
HDAC4P56524 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.97■□□□□ 0.79
HDAC4P56524 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.97■□□□□ 0.79
HDAC4P56524 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
HDAC4P56524 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.97■□□□□ 0.79
HDAC4P56524 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
HDAC4P56524 IRX1P1-201ENST00000438849 1838 ntBASIC19.97■□□□□ 0.79
HDAC4P56524 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
HDAC4P56524 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.97■□□□□ 0.79
HDAC4P56524 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.97■□□□□ 0.79
HDAC4P56524 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.96■□□□□ 0.79
HDAC4P56524 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
HDAC4P56524 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.96■□□□□ 0.79
HDAC4P56524 AC018445.3-201ENST00000624177 1945 ntBASIC19.96■□□□□ 0.79
HDAC4P56524 AC098818.2-201ENST00000564925 2320 ntBASIC19.96■□□□□ 0.79
HDAC4P56524 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.96■□□□□ 0.79
HDAC4P56524 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 TSPY23P-201ENST00000440136 739 ntBASIC19.96■□□□□ 0.79
HDAC4P56524 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.96■□□□□ 0.79
HDAC4P56524 AC026271.3-201ENST00000571884 352 ntBASIC19.96■□□□□ 0.79
HDAC4P56524 CD177P1-201ENST00000606252 935 ntBASIC19.96■□□□□ 0.79
HDAC4P56524 AC113410.3-201ENST00000623366 203 ntBASIC19.96■□□□□ 0.79
HDAC4P56524 AL031985.4-201ENST00000642138 673 ntBASIC19.96■□□□□ 0.79
HDAC4P56524 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
HDAC4P56524 AC087289.5-201ENST00000586076 3175 ntBASIC19.96■□□□□ 0.79
HDAC4P56524 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.96■□□□□ 0.79
HDAC4P56524 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.96■□□□□ 0.79
HDAC4P56524 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC4P56524 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
HDAC4P56524 AL020996.1-203ENST00000536896 2307 ntBASIC19.96■□□□□ 0.79
HDAC4P56524 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.95■□□□□ 0.79
HDAC4P56524 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 RCC2P6-201ENST00000526625 1557 ntBASIC19.95■□□□□ 0.78
HDAC4P56524 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.95■□□□□ 0.78
HDAC4P56524 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.95■□□□□ 0.78
HDAC4P56524 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
HDAC4P56524 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
HDAC4P56524 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.95■□□□□ 0.78
HDAC4P56524 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HDAC4P56524 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HDAC4P56524 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.95■□□□□ 0.78
HDAC4P56524 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.95■□□□□ 0.78
HDAC4P56524 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
HDAC4P56524 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 AC008550.1-201ENST00000511500 884 ntBASIC19.95■□□□□ 0.78
HDAC4P56524 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
HDAC4P56524 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.95■□□□□ 0.78
HDAC4P56524 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.95■□□□□ 0.78
HDAC4P56524 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.95■□□□□ 0.78
HDAC4P56524 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.95■□□□□ 0.78
HDAC4P56524 AL049637.2-201ENST00000641778 930 ntBASIC19.95■□□□□ 0.78
HDAC4P56524 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.95■□□□□ 0.78
HDAC4P56524 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
HDAC4P56524 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.95■□□□□ 0.78
HDAC4P56524 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC4P56524 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
HDAC4P56524 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.94■□□□□ 0.78
HDAC4P56524 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms