Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.72■□□□□ 0.59
SHMT2P34897 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.72■□□□□ 0.59
SHMT2P34897 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 ZNF815P-204ENST00000434898 1737 ntBASIC18.72■□□□□ 0.59
SHMT2P34897 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.72■□□□□ 0.59
SHMT2P34897 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.72■□□□□ 0.59
SHMT2P34897 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.72■□□□□ 0.59
SHMT2P34897 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.72■□□□□ 0.59
SHMT2P34897 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.72■□□□□ 0.59
SHMT2P34897 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.72■□□□□ 0.59
SHMT2P34897 REXO1L10P-201ENST00000615707 1290 ntBASIC18.72■□□□□ 0.59
SHMT2P34897 MIR6786-201ENST00000616843 113 ntBASIC18.72■□□□□ 0.59
SHMT2P34897 REXO1L12P-201ENST00000622156 912 ntBASIC18.72■□□□□ 0.59
SHMT2P34897 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SHMT2P34897 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHMT2P34897 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.72■□□□□ 0.59
SHMT2P34897 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.72■□□□□ 0.59
SHMT2P34897 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHMT2P34897 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
SHMT2P34897 AC026471.1-201ENST00000564629 3026 ntBASIC18.71■□□□□ 0.59
SHMT2P34897 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.71■□□□□ 0.59
SHMT2P34897 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SHMT2P34897 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SHMT2P34897 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SHMT2P34897 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.71■□□□□ 0.59
SHMT2P34897 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.71■□□□□ 0.59
SHMT2P34897 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.71■□□□□ 0.59
SHMT2P34897 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.71■□□□□ 0.59
SHMT2P34897 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.71■□□□□ 0.59
SHMT2P34897 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
SHMT2P34897 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SHMT2P34897 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.71■□□□□ 0.59
SHMT2P34897 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHMT2P34897 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.71■□□□□ 0.58
SHMT2P34897 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
SHMT2P34897 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
SHMT2P34897 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SHMT2P34897 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SHMT2P34897 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SHMT2P34897 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
SHMT2P34897 AC004951.3-201ENST00000418645 1148 ntBASIC18.7■□□□□ 0.58
SHMT2P34897 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.7■□□□□ 0.58
SHMT2P34897 Z85996.1-201ENST00000494644 937 ntBASIC18.7■□□□□ 0.58
SHMT2P34897 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 RCC2P6-201ENST00000526625 1557 ntBASIC18.7■□□□□ 0.58
SHMT2P34897 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.7■□□□□ 0.58
SHMT2P34897 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.7■□□□□ 0.58
SHMT2P34897 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.7■□□□□ 0.58
SHMT2P34897 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.7■□□□□ 0.58
SHMT2P34897 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
SHMT2P34897 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHMT2P34897 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SHMT2P34897 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.69■□□□□ 0.58
SHMT2P34897 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 LINC01465-201ENST00000408887 1940 ntBASIC18.69■□□□□ 0.58
SHMT2P34897 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SHMT2P34897 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.69■□□□□ 0.58
SHMT2P34897 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 B3GAT3P1-201ENST00000471720 806 ntBASIC18.69■□□□□ 0.58
SHMT2P34897 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.69■□□□□ 0.58
SHMT2P34897 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.69■□□□□ 0.58
SHMT2P34897 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
SHMT2P34897 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.69■□□□□ 0.58
SHMT2P34897 AL355075.4-201ENST00000554988 638 ntBASIC18.69■□□□□ 0.58
SHMT2P34897 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms