Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CCR12P-201ENST00000446203 998 ntBASIC21.56■■□□□ 1.04
CIITAP33076 TSPY17P-201ENST00000450329 467 ntBASIC21.56■■□□□ 1.04
CIITAP33076 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.56■■□□□ 1.04
CIITAP33076 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.56■■□□□ 1.04
CIITAP33076 AC116562.4-202ENST00000641738 218 ntBASIC21.56■■□□□ 1.04
CIITAP33076 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CIITAP33076 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.56■■□□□ 1.04
CIITAP33076 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CIITAP33076 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CIITAP33076 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.56■■□□□ 1.04
CIITAP33076 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.55■■□□□ 1.04
CIITAP33076 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.55■■□□□ 1.04
CIITAP33076 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CIITAP33076 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.55■■□□□ 1.04
CIITAP33076 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.55■■□□□ 1.04
CIITAP33076 AC007663.1-201ENST00000438948 1240 ntBASIC21.55■■□□□ 1.04
CIITAP33076 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.55■■□□□ 1.04
CIITAP33076 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.55■■□□□ 1.04
CIITAP33076 AC010653.2-201ENST00000623505 997 ntBASIC21.55■■□□□ 1.04
CIITAP33076 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.55■■□□□ 1.04
CIITAP33076 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.55■■□□□ 1.04
CIITAP33076 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 AC116562.4-201ENST00000641316 2276 ntBASIC21.55■■□□□ 1.04
CIITAP33076 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.55■■□□□ 1.04
CIITAP33076 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CIITAP33076 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CIITAP33076 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CIITAP33076 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.54■■□□□ 1.04
CIITAP33076 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CIITAP33076 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CIITAP33076 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.54■■□□□ 1.04
CIITAP33076 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.54■■□□□ 1.04
CIITAP33076 AC128688.1-201ENST00000487626 519 ntBASIC21.54■■□□□ 1.04
CIITAP33076 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.54■■□□□ 1.04
CIITAP33076 FAM87A-204ENST00000613235 858 ntBASIC21.54■■□□□ 1.04
CIITAP33076 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CIITAP33076 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CIITAP33076 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.54■■□□□ 1.04
CIITAP33076 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CIITAP33076 FP475955.4-201ENST00000623131 1990 ntBASIC21.54■■□□□ 1.04
CIITAP33076 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CIITAP33076 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.53■■□□□ 1.04
CIITAP33076 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CIITAP33076 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CIITAP33076 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.53■■□□□ 1.04
CIITAP33076 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.53■■□□□ 1.04
CIITAP33076 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CIITAP33076 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CIITAP33076 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.53■■□□□ 1.04
CIITAP33076 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.53■■□□□ 1.04
CIITAP33076 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.53■■□□□ 1.04
CIITAP33076 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.53■■□□□ 1.04
CIITAP33076 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.53■■□□□ 1.04
CIITAP33076 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.53■■□□□ 1.04
CIITAP33076 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CIITAP33076 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CIITAP33076 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
CIITAP33076 KRT8P3-201ENST00000519669 1449 ntBASIC21.53■■□□□ 1.04
CIITAP33076 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CIITAP33076 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.52■■□□□ 1.04
CIITAP33076 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.52■■□□□ 1.04
CIITAP33076 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.52■■□□□ 1.04
CIITAP33076 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.52■■□□□ 1.04
CIITAP33076 ECEL1P2-202ENST00000465689 757 ntBASIC21.52■■□□□ 1.04
CIITAP33076 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.52■■□□□ 1.04
CIITAP33076 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC21.52■■□□□ 1.04
CIITAP33076 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
CIITAP33076 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.52■■□□□ 1.04
CIITAP33076 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.52■■□□□ 1.04
CIITAP33076 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
CIITAP33076 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.52■■□□□ 1.04
CIITAP33076 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CIITAP33076 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CIITAP33076 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CIITAP33076 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.52■■□□□ 1.03
CIITAP33076 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CIITAP33076 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
CIITAP33076 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CIITAP33076 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CIITAP33076 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CIITAP33076 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms