Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.52■□□□□ 0.4
MSX1P28360 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.52■□□□□ 0.4
MSX1P28360 AL590326.2-201ENST00000625139 305 ntBASIC17.52■□□□□ 0.4
MSX1P28360 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
MSX1P28360 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
MSX1P28360 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.52■□□□□ 0.39
MSX1P28360 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.52■□□□□ 0.39
MSX1P28360 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
MSX1P28360 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.51■□□□□ 0.39
MSX1P28360 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 AC079598.2-202ENST00000546624 1451 ntBASIC17.51■□□□□ 0.39
MSX1P28360 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.51■□□□□ 0.39
MSX1P28360 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.51■□□□□ 0.39
MSX1P28360 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 ARMC10P1-201ENST00000313754 855 ntBASIC17.51■□□□□ 0.39
MSX1P28360 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.51■□□□□ 0.39
MSX1P28360 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.51■□□□□ 0.39
MSX1P28360 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.51■□□□□ 0.39
MSX1P28360 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.51■□□□□ 0.39
MSX1P28360 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.51■□□□□ 0.39
MSX1P28360 AP000525.1-201ENST00000608286 694 ntBASIC17.51■□□□□ 0.39
MSX1P28360 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.51■□□□□ 0.39
MSX1P28360 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.51■□□□□ 0.39
MSX1P28360 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.51■□□□□ 0.39
MSX1P28360 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX1P28360 LINC01465-201ENST00000408887 1940 ntBASIC17.51■□□□□ 0.39
MSX1P28360 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
MSX1P28360 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.5■□□□□ 0.39
MSX1P28360 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 SDHAP1-207ENST00000440850 2000 ntBASIC17.5■□□□□ 0.39
MSX1P28360 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
MSX1P28360 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MSX1P28360 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 AC116562.2-201ENST00000507042 360 ntBASIC17.5■□□□□ 0.39
MSX1P28360 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.5■□□□□ 0.39
MSX1P28360 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.5■□□□□ 0.39
MSX1P28360 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.5■□□□□ 0.39
MSX1P28360 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MSX1P28360 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.5■□□□□ 0.39
MSX1P28360 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX1P28360 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.49■□□□□ 0.39
MSX1P28360 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.49■□□□□ 0.39
MSX1P28360 RCC2P6-201ENST00000526625 1557 ntBASIC17.49■□□□□ 0.39
MSX1P28360 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.49■□□□□ 0.39
MSX1P28360 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
MSX1P28360 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 KRT8P9-201ENST00000558927 1449 ntBASIC17.49■□□□□ 0.39
MSX1P28360 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 KRT8P41-201ENST00000533985 1514 ntBASIC17.49■□□□□ 0.39
MSX1P28360 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.49■□□□□ 0.39
MSX1P28360 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.49■□□□□ 0.39
MSX1P28360 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.49■□□□□ 0.39
MSX1P28360 AC130371.2-201ENST00000619443 611 ntBASIC17.49■□□□□ 0.39
MSX1P28360 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
MSX1P28360 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX1P28360 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
MSX1P28360 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.49■□□□□ 0.39
MSX1P28360 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
MSX1P28360 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.48■□□□□ 0.39
MSX1P28360 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.48■□□□□ 0.39
MSX1P28360 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.48■□□□□ 0.39
MSX1P28360 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms