Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH3P20585 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
MSH3P20585 KRT17P2-201ENST00000300992 1314 ntBASIC19.02■□□□□ 0.64
MSH3P20585 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
MSH3P20585 RCC2P6-201ENST00000526625 1557 ntBASIC19.02■□□□□ 0.64
MSH3P20585 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
MSH3P20585 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
MSH3P20585 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
MSH3P20585 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.02■□□□□ 0.64
MSH3P20585 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.02■□□□□ 0.64
MSH3P20585 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH3P20585 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
MSH3P20585 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH3P20585 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.02■□□□□ 0.64
MSH3P20585 AC004951.3-201ENST00000418645 1148 ntBASIC19.02■□□□□ 0.64
MSH3P20585 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
MSH3P20585 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH3P20585 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.02■□□□□ 0.64
MSH3P20585 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
MSH3P20585 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.02■□□□□ 0.64
MSH3P20585 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH3P20585 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.02■□□□□ 0.64
MSH3P20585 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.02■□□□□ 0.64
MSH3P20585 MIR6786-201ENST00000616843 113 ntBASIC19.02■□□□□ 0.64
MSH3P20585 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH3P20585 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.02■□□□□ 0.63
MSH3P20585 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
MSH3P20585 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.02■□□□□ 0.63
MSH3P20585 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.02■□□□□ 0.63
MSH3P20585 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
MSH3P20585 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH3P20585 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSH3P20585 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH3P20585 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.01■□□□□ 0.63
MSH3P20585 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
MSH3P20585 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
MSH3P20585 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSH3P20585 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH3P20585 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
MSH3P20585 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.01■□□□□ 0.63
MSH3P20585 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.01■□□□□ 0.63
MSH3P20585 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.01■□□□□ 0.63
MSH3P20585 AC011298.2-201ENST00000617989 482 ntBASIC19.01■□□□□ 0.63
MSH3P20585 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH3P20585 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.01■□□□□ 0.63
MSH3P20585 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.01■□□□□ 0.63
MSH3P20585 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSH3P20585 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH3P20585 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
MSH3P20585 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
MSH3P20585 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH3P20585 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
MSH3P20585 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH3P20585 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19■□□□□ 0.63
MSH3P20585 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19■□□□□ 0.63
MSH3P20585 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH3P20585 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH3P20585 AL020996.1-203ENST00000536896 2307 ntBASIC19■□□□□ 0.63
MSH3P20585 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19■□□□□ 0.63
MSH3P20585 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19■□□□□ 0.63
MSH3P20585 AL596275.1-201ENST00000423464 877 ntBASIC19■□□□□ 0.63
MSH3P20585 B3GAT3P1-201ENST00000471720 806 ntBASIC19■□□□□ 0.63
MSH3P20585 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
MSH3P20585 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19■□□□□ 0.63
MSH3P20585 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19■□□□□ 0.63
MSH3P20585 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19■□□□□ 0.63
MSH3P20585 AP003071.4-201ENST00000562276 1284 ntBASIC19■□□□□ 0.63
MSH3P20585 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
MSH3P20585 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH3P20585 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19■□□□□ 0.63
MSH3P20585 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19■□□□□ 0.63
MSH3P20585 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19■□□□□ 0.63
MSH3P20585 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH3P20585 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19■□□□□ 0.63
MSH3P20585 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19■□□□□ 0.63
MSH3P20585 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
MSH3P20585 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
MSH3P20585 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSH3P20585 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
MSH3P20585 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.99■□□□□ 0.63
MSH3P20585 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.99■□□□□ 0.63
MSH3P20585 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
MSH3P20585 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.99■□□□□ 0.63
MSH3P20585 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.99■□□□□ 0.63
MSH3P20585 AC011506.1-201ENST00000474329 610 ntBASIC18.99■□□□□ 0.63
MSH3P20585 AC116562.2-201ENST00000507042 360 ntBASIC18.99■□□□□ 0.63
MSH3P20585 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.99■□□□□ 0.63
MSH3P20585 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.99■□□□□ 0.63
MSH3P20585 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.99■□□□□ 0.63
MSH3P20585 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
MSH3P20585 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms