Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA1O95477 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
ABCA1O95477 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16■□□□□ 0.15
ABCA1O95477 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16■□□□□ 0.15
ABCA1O95477 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16■□□□□ 0.15
ABCA1O95477 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16■□□□□ 0.15
ABCA1O95477 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 HOMER2P1-201ENST00000455653 964 ntBASIC16■□□□□ 0.15
ABCA1O95477 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16■□□□□ 0.15
ABCA1O95477 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
ABCA1O95477 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA1O95477 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.99■□□□□ 0.15
ABCA1O95477 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.99■□□□□ 0.15
ABCA1O95477 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC15.99■□□□□ 0.15
ABCA1O95477 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.99■□□□□ 0.15
ABCA1O95477 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
ABCA1O95477 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.99■□□□□ 0.15
ABCA1O95477 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.99■□□□□ 0.15
ABCA1O95477 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
ABCA1O95477 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
ABCA1O95477 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC15.99■□□□□ 0.15
ABCA1O95477 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.99■□□□□ 0.15
ABCA1O95477 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.99■□□□□ 0.15
ABCA1O95477 AC140113.3-201ENST00000605663 199 ntBASIC15.99■□□□□ 0.15
ABCA1O95477 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
ABCA1O95477 DPP3P2-201ENST00000416030 1696 ntBASIC15.99■□□□□ 0.15
ABCA1O95477 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
ABCA1O95477 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.99■□□□□ 0.15
ABCA1O95477 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA1O95477 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
ABCA1O95477 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC15.98■□□□□ 0.15
ABCA1O95477 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.98■□□□□ 0.15
ABCA1O95477 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.98■□□□□ 0.15
ABCA1O95477 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC15.98■□□□□ 0.15
ABCA1O95477 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.98■□□□□ 0.15
ABCA1O95477 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
ABCA1O95477 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.98■□□□□ 0.15
ABCA1O95477 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.98■□□□□ 0.15
ABCA1O95477 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.98■□□□□ 0.15
ABCA1O95477 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 KRT16P6-202ENST00000425692 1426 ntBASIC15.98■□□□□ 0.15
ABCA1O95477 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
ABCA1O95477 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
ABCA1O95477 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
ABCA1O95477 PHGDH-210ENST00000641115 1638 ntBASIC15.98■□□□□ 0.15
ABCA1O95477 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 AL353719.1-201ENST00000566847 864 ntBASIC15.98■□□□□ 0.15
ABCA1O95477 RN7SL510P-201ENST00000581311 263 ntBASIC15.98■□□□□ 0.15
ABCA1O95477 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
ABCA1O95477 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC15.98■□□□□ 0.15
ABCA1O95477 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA1O95477 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.98■□□□□ 0.15
ABCA1O95477 IER3-202ENST00000376377 1350 ntBASIC15.98■□□□□ 0.15
ABCA1O95477 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA1O95477 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA1O95477 AL691432.2-201ENST00000607222 2038 ntBASIC15.97■□□□□ 0.15
ABCA1O95477 AL162377.1-201ENST00000618844 1793 ntBASIC15.97■□□□□ 0.15
ABCA1O95477 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA1O95477 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
ABCA1O95477 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA1O95477 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA1O95477 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
ABCA1O95477 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC15.97■□□□□ 0.15
ABCA1O95477 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.97■□□□□ 0.15
ABCA1O95477 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.97■□□□□ 0.15
ABCA1O95477 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.97■□□□□ 0.15
ABCA1O95477 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA1O95477 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA1O95477 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA1O95477 USP39-204ENST00000409766 2033 ntTSL 2 BASIC15.97■□□□□ 0.15
ABCA1O95477 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA1O95477 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms