Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP4O75161 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP4O75161 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP4O75161 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
NPHP4O75161 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP4O75161 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC26.96■■□□□ 1.91
NPHP4O75161 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC26.96■■□□□ 1.91
NPHP4O75161 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC26.96■■□□□ 1.91
NPHP4O75161 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP4O75161 PMS2P7-201ENST00000506558 1336 ntBASIC26.96■■□□□ 1.91
NPHP4O75161 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP4O75161 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP4O75161 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
NPHP4O75161 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
NPHP4O75161 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP4O75161 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC26.95■■□□□ 1.9
NPHP4O75161 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP4O75161 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP4O75161 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP4O75161 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC26.95■■□□□ 1.9
NPHP4O75161 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC26.95■■□□□ 1.9
NPHP4O75161 NUS1P2-201ENST00000417358 873 ntBASIC26.95■■□□□ 1.9
NPHP4O75161 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP4O75161 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC26.95■■□□□ 1.9
NPHP4O75161 MCCD1P1-208ENST00000445732 328 ntBASIC26.95■■□□□ 1.9
NPHP4O75161 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC26.95■■□□□ 1.9
NPHP4O75161 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC26.95■■□□□ 1.9
NPHP4O75161 AC005332.3-201ENST00000589904 676 ntBASIC26.95■■□□□ 1.9
NPHP4O75161 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP4O75161 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC26.94■■□□□ 1.9
NPHP4O75161 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP4O75161 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP4O75161 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP4O75161 FABP5-202ENST00000396359 986 ntTSL 5 BASIC26.94■■□□□ 1.9
NPHP4O75161 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC26.94■■□□□ 1.9
NPHP4O75161 MIR7706-201ENST00000613747 67 ntBASIC26.94■■□□□ 1.9
NPHP4O75161 AC148477.8-201ENST00000624298 468 ntBASIC26.94■■□□□ 1.9
NPHP4O75161 CCNC-219ENST00000627680 896 ntTSL 5 BASIC26.94■■□□□ 1.9
NPHP4O75161 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP4O75161 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP4O75161 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC26.94■■□□□ 1.9
NPHP4O75161 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP4O75161 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP4O75161 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
NPHP4O75161 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC26.93■■□□□ 1.9
NPHP4O75161 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP4O75161 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC26.93■■□□□ 1.9
NPHP4O75161 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC26.93■■□□□ 1.9
NPHP4O75161 FAM197Y8-203ENST00000450145 560 ntBASIC26.93■■□□□ 1.9
NPHP4O75161 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC26.93■■□□□ 1.9
NPHP4O75161 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC26.93■■□□□ 1.9
NPHP4O75161 LINC02084-201ENST00000606069 1096 ntBASIC26.93■■□□□ 1.9
NPHP4O75161 AL592071.1-201ENST00000611956 408 ntBASIC26.93■■□□□ 1.9
NPHP4O75161 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC26.93■■□□□ 1.9
NPHP4O75161 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP4O75161 NSUN5P1-202ENST00000421140 1535 ntBASIC26.93■■□□□ 1.9
NPHP4O75161 NSUN5P2-203ENST00000457352 1529 ntBASIC26.93■■□□□ 1.9
NPHP4O75161 GOLGA2P11-201ENST00000562660 1621 ntBASIC26.93■■□□□ 1.9
NPHP4O75161 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC26.93■■□□□ 1.9
NPHP4O75161 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP4O75161 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP4O75161 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP4O75161 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP4O75161 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP4O75161 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
NPHP4O75161 MED22-202ENST00000371999 987 ntTSL 3 BASIC26.92■■□□□ 1.9
NPHP4O75161 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
NPHP4O75161 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC26.92■■□□□ 1.9
NPHP4O75161 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC26.92■■□□□ 1.9
NPHP4O75161 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP4O75161 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP4O75161 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP4O75161 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC26.92■■□□□ 1.9
NPHP4O75161 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC26.92■■□□□ 1.9
NPHP4O75161 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP4O75161 IGHV3-41-201ENST00000613121 348 ntBASIC26.92■■□□□ 1.9
NPHP4O75161 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
NPHP4O75161 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC26.92■■□□□ 1.9
NPHP4O75161 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP4O75161 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
NPHP4O75161 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
NPHP4O75161 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP4O75161 AP005901.3-202ENST00000581653 237 ntBASIC26.91■■□□□ 1.9
NPHP4O75161 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC26.91■■□□□ 1.9
NPHP4O75161 AL355385.1-201ENST00000606123 409 ntBASIC26.91■■□□□ 1.9
NPHP4O75161 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
NPHP4O75161 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC26.91■■□□□ 1.9
NPHP4O75161 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP4O75161 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP4O75161 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP4O75161 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC26.91■■□□□ 1.9
NPHP4O75161 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP4O75161 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC26.91■■□□□ 1.9
NPHP4O75161 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC26.91■■□□□ 1.9
NPHP4O75161 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP4O75161 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC26.91■■□□□ 1.9
NPHP4O75161 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC26.9■■□□□ 1.9
NPHP4O75161 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC26.9■■□□□ 1.9
NPHP4O75161 CDV3-207ENST00000508481 661 ntTSL 3 BASIC26.9■■□□□ 1.9
NPHP4O75161 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC26.9■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms