Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.9■□□□□ 0.94
CLDN3O15551 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN3O15551 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.9■□□□□ 0.94
CLDN3O15551 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CLDN3O15551 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.89■□□□□ 0.94
CLDN3O15551 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLDN3O15551 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CLDN3O15551 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLDN3O15551 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN3O15551 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN3O15551 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN3O15551 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.89■□□□□ 0.93
CLDN3O15551 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.89■□□□□ 0.93
CLDN3O15551 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.89■□□□□ 0.93
CLDN3O15551 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.89■□□□□ 0.93
CLDN3O15551 NAPSB-206ENST00000562112 1266 ntBASIC20.89■□□□□ 0.93
CLDN3O15551 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.89■□□□□ 0.93
CLDN3O15551 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN3O15551 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN3O15551 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CLDN3O15551 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN3O15551 AC087289.5-201ENST00000586076 3175 ntBASIC20.89■□□□□ 0.93
CLDN3O15551 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN3O15551 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
CLDN3O15551 CYP2D8P-201ENST00000433633 1490 ntBASIC20.88■□□□□ 0.93
CLDN3O15551 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.88■□□□□ 0.93
CLDN3O15551 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.88■□□□□ 0.93
CLDN3O15551 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
CLDN3O15551 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CLDN3O15551 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CLDN3O15551 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.88■□□□□ 0.93
CLDN3O15551 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
CLDN3O15551 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.88■□□□□ 0.93
CLDN3O15551 AC133561.5-201ENST00000635547 218 ntBASIC20.88■□□□□ 0.93
CLDN3O15551 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.88■□□□□ 0.93
CLDN3O15551 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN3O15551 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 TSPY23P-201ENST00000440136 739 ntBASIC20.87■□□□□ 0.93
CLDN3O15551 C2orf69P3-201ENST00000565542 1120 ntBASIC20.87■□□□□ 0.93
CLDN3O15551 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CLDN3O15551 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN3O15551 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
CLDN3O15551 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN3O15551 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CLDN3O15551 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.86■□□□□ 0.93
CLDN3O15551 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CLDN3O15551 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN3O15551 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CLDN3O15551 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.86■□□□□ 0.93
CLDN3O15551 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN3O15551 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.86■□□□□ 0.93
CLDN3O15551 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN3O15551 AC010947.1-201ENST00000623454 693 ntBASIC20.86■□□□□ 0.93
CLDN3O15551 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN3O15551 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.86■□□□□ 0.93
CLDN3O15551 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.86■□□□□ 0.93
CLDN3O15551 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN3O15551 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CLDN3O15551 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CLDN3O15551 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN3O15551 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
CLDN3O15551 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN3O15551 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.86■□□□□ 0.93
CLDN3O15551 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN3O15551 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
CLDN3O15551 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.86■□□□□ 0.93
CLDN3O15551 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.86■□□□□ 0.93
CLDN3O15551 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CLDN3O15551 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.86■□□□□ 0.93
CLDN3O15551 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CLDN3O15551 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.85■□□□□ 0.93
CLDN3O15551 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 AL032819.2-201ENST00000624543 2162 ntBASIC20.85■□□□□ 0.93
CLDN3O15551 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CLDN3O15551 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN3O15551 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms