Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LY6E-205ENST00000519611 635 ntTSL 3 BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AL121829.2-201ENST00000620908 328 ntBASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AL049637.2-201ENST00000641778 930 ntBASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC25.77■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 NBPF21P-201ENST00000425093 1451 ntBASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 UPK3BP1-201ENST00000428678 509 ntBASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 KRT18P56-201ENST00000507275 550 ntBASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 NMU-205ENST00000511469 756 ntTSL 3 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AP000593.1-201ENST00000393668 712 ntBASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
SENP3-EIF4A1A0A087X0R7 AP001412.1-201ENST00000608405 714 ntBASIC25.73■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms