Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
ABCA4P78363 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
ABCA4P78363 MIR219A2-201ENST00000608502 1504 ntBASIC22.04■■□□□ 1.12
ABCA4P78363 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
ABCA4P78363 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
ABCA4P78363 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
ABCA4P78363 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
ABCA4P78363 TSPY13P-201ENST00000338964 914 ntBASIC22.03■■□□□ 1.12
ABCA4P78363 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.03■■□□□ 1.12
ABCA4P78363 AC110285.7-201ENST00000624417 1536 ntBASIC22.02■■□□□ 1.12
ABCA4P78363 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
ABCA4P78363 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
ABCA4P78363 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
ABCA4P78363 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
ABCA4P78363 CHST11-203ENST00000547956 936 ntTSL 2 BASIC22.01■■□□□ 1.11
ABCA4P78363 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC22■■□□□ 1.11
ABCA4P78363 RARRES2P1-201ENST00000474487 481 ntBASIC22■■□□□ 1.11
ABCA4P78363 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC22■■□□□ 1.11
ABCA4P78363 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
ABCA4P78363 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22■■□□□ 1.11
ABCA4P78363 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22■■□□□ 1.11
ABCA4P78363 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22■■□□□ 1.11
ABCA4P78363 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.99■■□□□ 1.11
ABCA4P78363 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.99■■□□□ 1.11
ABCA4P78363 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
ABCA4P78363 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.98■■□□□ 1.11
ABCA4P78363 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.98■■□□□ 1.11
ABCA4P78363 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC21.98■■□□□ 1.11
ABCA4P78363 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.98■■□□□ 1.11
ABCA4P78363 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.98■■□□□ 1.11
ABCA4P78363 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.97■■□□□ 1.11
ABCA4P78363 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
ABCA4P78363 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
ABCA4P78363 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
ABCA4P78363 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
ABCA4P78363 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.96■■□□□ 1.11
ABCA4P78363 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
ABCA4P78363 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
ABCA4P78363 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
ABCA4P78363 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
ABCA4P78363 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
ABCA4P78363 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
ABCA4P78363 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.95■■□□□ 1.1
ABCA4P78363 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
ABCA4P78363 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
ABCA4P78363 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ABCA4P78363 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ABCA4P78363 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
ABCA4P78363 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.92■■□□□ 1.1
ABCA4P78363 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.92■■□□□ 1.1
ABCA4P78363 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ABCA4P78363 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.91■■□□□ 1.1
ABCA4P78363 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.91■■□□□ 1.1
ABCA4P78363 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ABCA4P78363 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.91■■□□□ 1.1
ABCA4P78363 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ABCA4P78363 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ABCA4P78363 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ABCA4P78363 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.9■■□□□ 1.1
ABCA4P78363 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ABCA4P78363 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.9■■□□□ 1.1
ABCA4P78363 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ABCA4P78363 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.9■■□□□ 1.1
ABCA4P78363 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ABCA4P78363 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
ABCA4P78363 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
ABCA4P78363 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ABCA4P78363 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ABCA4P78363 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
ABCA4P78363 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
ABCA4P78363 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.89■■□□□ 1.09
ABCA4P78363 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ABCA4P78363 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.89■■□□□ 1.09
ABCA4P78363 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.89■■□□□ 1.09
ABCA4P78363 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ABCA4P78363 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ABCA4P78363 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.87■■□□□ 1.09
ABCA4P78363 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.87■■□□□ 1.09
ABCA4P78363 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.87■■□□□ 1.09
ABCA4P78363 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
ABCA4P78363 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.87■■□□□ 1.09
ABCA4P78363 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
ABCA4P78363 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ABCA4P78363 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.86■■□□□ 1.09
ABCA4P78363 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.86■■□□□ 1.09
ABCA4P78363 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ABCA4P78363 AC004987.1-201ENST00000428627 508 ntBASIC21.86■■□□□ 1.09
ABCA4P78363 ATP5G2P3-201ENST00000429083 425 ntBASIC21.86■■□□□ 1.09
ABCA4P78363 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.86■■□□□ 1.09
ABCA4P78363 U85056.1-201ENST00000616429 682 ntBASIC21.86■■□□□ 1.09
ABCA4P78363 AL035685.1-201ENST00000636663 812 ntBASIC21.86■■□□□ 1.09
ABCA4P78363 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
ABCA4P78363 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
ABCA4P78363 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.85■■□□□ 1.09
ABCA4P78363 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
ABCA4P78363 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.85■■□□□ 1.09
ABCA4P78363 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ABCA4P78363 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
ABCA4P78363 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
ABCA4P78363 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms