Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.76■□□□□ 0.91
Pcdhgb8A0A140LI48 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Pcdhgb8A0A140LI48 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC20.76■□□□□ 0.91
Pcdhgb8A0A140LI48 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Pcdhgb8A0A140LI48 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Pcdhgb8A0A140LI48 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Pcdhgb8A0A140LI48 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC20.75■□□□□ 0.91
Pcdhgb8A0A140LI48 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
Pcdhgb8A0A140LI48 Nkain2-201ENSMUST00000092602 558 ntBASIC20.75■□□□□ 0.91
Pcdhgb8A0A140LI48 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdhgb8A0A140LI48 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdhgb8A0A140LI48 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC20.73■□□□□ 0.91
Pcdhgb8A0A140LI48 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdhgb8A0A140LI48 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdhgb8A0A140LI48 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdhgb8A0A140LI48 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdhgb8A0A140LI48 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdhgb8A0A140LI48 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdhgb8A0A140LI48 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
Pcdhgb8A0A140LI48 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Pcdhgb8A0A140LI48 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdhgb8A0A140LI48 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.71■□□□□ 0.91
Pcdhgb8A0A140LI48 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdhgb8A0A140LI48 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdhgb8A0A140LI48 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdhgb8A0A140LI48 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdhgb8A0A140LI48 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdhgb8A0A140LI48 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdhgb8A0A140LI48 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdhgb8A0A140LI48 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
Pcdhgb8A0A140LI48 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdhgb8A0A140LI48 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.68■□□□□ 0.9
Pcdhgb8A0A140LI48 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Pcdhgb8A0A140LI48 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdhgb8A0A140LI48 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Pcdhgb8A0A140LI48 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdhgb8A0A140LI48 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Pcdhgb8A0A140LI48 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.67■□□□□ 0.9
Pcdhgb8A0A140LI48 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC20.67■□□□□ 0.9
Pcdhgb8A0A140LI48 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Pcdhgb8A0A140LI48 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdhgb8A0A140LI48 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdhgb8A0A140LI48 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Pcdhgb8A0A140LI48 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdhgb8A0A140LI48 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdhgb8A0A140LI48 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdhgb8A0A140LI48 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdhgb8A0A140LI48 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdhgb8A0A140LI48 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pcdhgb8A0A140LI48 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Pcdhgb8A0A140LI48 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Pcdhgb8A0A140LI48 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Pcdhgb8A0A140LI48 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Pcdhgb8A0A140LI48 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Pcdhgb8A0A140LI48 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Pcdhgb8A0A140LI48 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.63■□□□□ 0.89
Pcdhgb8A0A140LI48 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pcdhgb8A0A140LI48 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Pcdhgb8A0A140LI48 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.63■□□□□ 0.89
Pcdhgb8A0A140LI48 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Pcdhgb8A0A140LI48 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
Pcdhgb8A0A140LI48 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Pcdhgb8A0A140LI48 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Pcdhgb8A0A140LI48 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Pcdhgb8A0A140LI48 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.62■□□□□ 0.89
Pcdhgb8A0A140LI48 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Pcdhgb8A0A140LI48 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Pcdhgb8A0A140LI48 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Pcdhgb8A0A140LI48 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Pcdhgb8A0A140LI48 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Pcdhgb8A0A140LI48 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC20.61■□□□□ 0.89
Pcdhgb8A0A140LI48 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Pcdhgb8A0A140LI48 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Pcdhgb8A0A140LI48 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.6■□□□□ 0.89
Pcdhgb8A0A140LI48 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Pcdhgb8A0A140LI48 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Pcdhgb8A0A140LI48 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Pcdhgb8A0A140LI48 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Pcdhgb8A0A140LI48 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Pcdhgb8A0A140LI48 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdhgb8A0A140LI48 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdhgb8A0A140LI48 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Pcdhgb8A0A140LI48 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdhgb8A0A140LI48 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdhgb8A0A140LI48 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdhgb8A0A140LI48 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdhgb8A0A140LI48 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Pcdhgb8A0A140LI48 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdhgb8A0A140LI48 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Pcdhgb8A0A140LI48 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdhgb8A0A140LI48 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdhgb8A0A140LI48 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdhgb8A0A140LI48 AC122428.3-201ENSMUST00000215551 2290 ntBASIC20.55■□□□□ 0.88
Pcdhgb8A0A140LI48 Gm5987-201ENSMUST00000196433 1151 ntBASIC20.55■□□□□ 0.88
Pcdhgb8A0A140LI48 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.55■□□□□ 0.88
Pcdhgb8A0A140LI48 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdhgb8A0A140LI48 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC20.55■□□□□ 0.88
Pcdhgb8A0A140LI48 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdhgb8A0A140LI48 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdhgb8A0A140LI48 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms