Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC097504.2-201ENST00000608088 454 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 CYCSP33-201ENST00000414485 327 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS13AQ96RL7 EBAG9P1-201ENST00000418955 543 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS13AQ96RL7 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS13AQ96RL7 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.31□□□□□ -2.2
VPS13AQ96RL7 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS13AQ96RL7 AP001029.3-201ENST00000588063 596 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 TEX21P-201ENST00000447107 1476 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 SNORA40.6-201ENST00000391153 128 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.31□□□□□ -2.2
VPS13AQ96RL7 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS13AQ96RL7 RPS15AP1-201ENST00000457423 391 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 SUB1P4-201ENST00000566062 339 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.31□□□□□ -2.2
VPS13AQ96RL7 MIR6086-201ENST00000638065 55 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
VPS13AQ96RL7 U8.1-201ENST00000362843 134 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 AL445305.1-201ENST00000432577 575 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 AC011472.4-201ENST00000615848 491 ntBASIC1.31□□□□□ -2.2
VPS13AQ96RL7 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
VPS13AQ96RL7 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
VPS13AQ96RL7 Z85995.1-201ENST00000415547 335 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 CYCSP48-201ENST00000417124 323 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 ARL5AP3-201ENST00000439327 386 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 VN1R96P-201ENST00000446052 858 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 AC108059.3-201ENST00000456388 214 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 AP003033.1-201ENST00000527244 415 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 DUXAP5-201ENST00000529668 529 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC1.3□□□□□ -2.2
VPS13AQ96RL7 AC098657.3-201ENST00000620434 263 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.3□□□□□ -2.2
VPS13AQ96RL7 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
VPS13AQ96RL7 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
VPS13AQ96RL7 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.3□□□□□ -2.2
VPS13AQ96RL7 AL031659.1-201ENST00000447075 539 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.3□□□□□ -2.2
VPS13AQ96RL7 AC105245.1-201ENST00000581934 244 ntBASIC1.3□□□□□ -2.2
VPS13AQ96RL7 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 SNORD121B-201ENST00000458838 81 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 NPM1P52-201ENST00000518264 846 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 RNU6-716P-201ENST00000365621 103 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 RNU2-25P-201ENST00000411041 191 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AL691517.1-201ENST00000440833 1235 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AL109741.2-201ENST00000455561 343 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AC025755.1-201ENST00000521306 278 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS13AQ96RL7 MIR3935-201ENST00000583472 104 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AC090525.3-201ENST00000605601 189 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AL590099.1-201ENST00000615276 138 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 uc_338.12-201ENST00000616344 181 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 AC010487.4-201ENST00000637027 61 ntBASIC1.29□□□□□ -2.2
VPS13AQ96RL7 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
VPS13AQ96RL7 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC1.28□□□□□ -2.2
VPS13AQ96RL7 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
VPS13AQ96RL7 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC1.28□□□□□ -2.2
VPS13AQ96RL7 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
VPS13AQ96RL7 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.28□□□□□ -2.2
VPS13AQ96RL7 AC104115.2-201ENST00000523026 687 ntBASIC1.28□□□□□ -2.2
VPS13AQ96RL7 AL109653.1-201ENST00000603091 248 ntBASIC1.28□□□□□ -2.2
VPS13AQ96RL7 AC067852.7-201ENST00000623270 535 ntBASIC1.28□□□□□ -2.2
VPS13AQ96RL7 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC1.28□□□□□ -2.2
VPS13AQ96RL7 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
VPS13AQ96RL7 SETP10-201ENST00000424368 814 ntBASIC1.28□□□□□ -2.21
VPS13AQ96RL7 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.28□□□□□ -2.21
VPS13AQ96RL7 SNRPFP3-201ENST00000457792 225 ntBASIC1.28□□□□□ -2.21
VPS13AQ96RL7 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.28□□□□□ -2.21
VPS13AQ96RL7 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.28□□□□□ -2.21
VPS13AQ96RL7 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC1.28□□□□□ -2.21
VPS13AQ96RL7 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 VTRNA1-1-201ENST00000363120 99 ntBASIC1.27□□□□□ -2.21
VPS13AQ96RL7 SNORA62.2-201ENST00000364672 152 ntBASIC1.27□□□□□ -2.21
VPS13AQ96RL7 RNU1-78P-201ENST00000391248 165 ntBASIC1.27□□□□□ -2.21
VPS13AQ96RL7 AC089999.1-201ENST00000460336 374 ntBASIC1.27□□□□□ -2.21
VPS13AQ96RL7 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 AC111188.2-201ENST00000529697 1387 ntBASIC1.27□□□□□ -2.21
VPS13AQ96RL7 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 AL358176.2-201ENST00000425769 204 ntBASIC1.27□□□□□ -2.21
VPS13AQ96RL7 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 AC104307.1-201ENST00000616142 196 ntBASIC1.27□□□□□ -2.21
VPS13AQ96RL7 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms