Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC9.11□□□□□ -0.95
MSH5O43196 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
MSH5O43196 AL359195.2-201ENST00000623657 4412 ntBASIC9.11□□□□□ -0.95
MSH5O43196 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
MSH5O43196 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC9.1□□□□□ -0.95
MSH5O43196 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
MSH5O43196 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC9.1□□□□□ -0.95
MSH5O43196 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
MSH5O43196 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC9.1□□□□□ -0.95
MSH5O43196 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
MSH5O43196 STAG3L4-201ENST00000352103 530 ntBASIC9.1□□□□□ -0.95
MSH5O43196 RNA5SP512-201ENST00000364550 120 ntBASIC9.1□□□□□ -0.95
MSH5O43196 RNU6-816P-201ENST00000390914 107 ntBASIC9.1□□□□□ -0.95
MSH5O43196 RNU6-1268P-201ENST00000391214 107 ntBASIC9.1□□□□□ -0.95
MSH5O43196 RNU6-1239P-201ENST00000391310 107 ntBASIC9.1□□□□□ -0.95
MSH5O43196 RPS21P8-201ENST00000413365 247 ntBASIC9.1□□□□□ -0.95
MSH5O43196 RPL23AP95-201ENST00000426806 265 ntBASIC9.1□□□□□ -0.95
MSH5O43196 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC9.1□□□□□ -0.95
MSH5O43196 AP000705.1-201ENST00000454567 350 ntBASIC9.1□□□□□ -0.95
MSH5O43196 AC087588.1-201ENST00000462203 316 ntBASIC9.1□□□□□ -0.95
MSH5O43196 AC097639.2-201ENST00000603159 172 ntBASIC9.1□□□□□ -0.95
MSH5O43196 AC005191.1-201ENST00000603950 358 ntBASIC9.1□□□□□ -0.95
MSH5O43196 RN7SL126P-201ENST00000616400 299 ntBASIC9.1□□□□□ -0.95
MSH5O43196 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
MSH5O43196 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC9.1□□□□□ -0.95
MSH5O43196 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
MSH5O43196 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
MSH5O43196 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC9.1□□□□□ -0.95
MSH5O43196 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
MSH5O43196 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
MSH5O43196 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC9.1□□□□□ -0.95
MSH5O43196 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
MSH5O43196 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
MSH5O43196 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
MSH5O43196 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
MSH5O43196 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
MSH5O43196 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC9.09□□□□□ -0.95
MSH5O43196 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC9.09□□□□□ -0.95
MSH5O43196 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
MSH5O43196 RNU6-1167P-201ENST00000363227 94 ntBASIC9.09□□□□□ -0.95
MSH5O43196 CYB5AP4-201ENST00000396692 399 ntBASIC9.09□□□□□ -0.95
MSH5O43196 SSXP9-201ENST00000417503 292 ntBASIC9.09□□□□□ -0.95
MSH5O43196 AC097359.1-201ENST00000447946 463 ntBASIC9.09□□□□□ -0.95
MSH5O43196 SNRPGP7-201ENST00000469016 106 ntBASIC9.09□□□□□ -0.95
MSH5O43196 SNORD77.4-201ENST00000516158 81 ntBASIC9.09□□□□□ -0.95
MSH5O43196 RNY4P20-201ENST00000516678 93 ntBASIC9.09□□□□□ -0.95
MSH5O43196 AC025754.2-201ENST00000606491 432 ntBASIC9.09□□□□□ -0.95
MSH5O43196 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
MSH5O43196 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
MSH5O43196 GDA-209ENST00000545168 5362 ntTSL 2 BASIC9.09□□□□□ -0.95
MSH5O43196 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC9.09□□□□□ -0.95
MSH5O43196 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC9.09□□□□□ -0.95
MSH5O43196 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC9.09□□□□□ -0.95
MSH5O43196 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
MSH5O43196 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
MSH5O43196 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC9.09□□□□□ -0.96
MSH5O43196 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC9.09□□□□□ -0.96
MSH5O43196 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC9.08□□□□□ -0.96
MSH5O43196 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC9.08□□□□□ -0.96
MSH5O43196 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC9.08□□□□□ -0.96
MSH5O43196 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC9.08□□□□□ -0.96
MSH5O43196 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC9.08□□□□□ -0.96
MSH5O43196 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC9.08□□□□□ -0.96
MSH5O43196 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
MSH5O43196 RNY1P6-201ENST00000384193 109 ntBASIC9.08□□□□□ -0.96
MSH5O43196 MIR575-201ENST00000385013 94 ntBASIC9.08□□□□□ -0.96
MSH5O43196 RN7SL390P-201ENST00000470634 284 ntBASIC9.08□□□□□ -0.96
MSH5O43196 AC040975.1-201ENST00000472104 316 ntBASIC9.08□□□□□ -0.96
MSH5O43196 RN7SKP11-201ENST00000517018 287 ntBASIC9.08□□□□□ -0.96
MSH5O43196 AC091078.2-201ENST00000557145 559 ntBASIC9.08□□□□□ -0.96
MSH5O43196 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC9.08□□□□□ -0.96
MSH5O43196 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC9.08□□□□□ -0.96
MSH5O43196 AC112484.5-201ENST00000624189 228 ntBASIC9.08□□□□□ -0.96
MSH5O43196 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
MSH5O43196 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
MSH5O43196 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC9.08□□□□□ -0.96
MSH5O43196 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
MSH5O43196 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
MSH5O43196 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
MSH5O43196 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC9.07□□□□□ -0.96
MSH5O43196 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
MSH5O43196 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC9.07□□□□□ -0.96
MSH5O43196 TTC41P-205ENST00000551270 3963 ntBASIC9.07□□□□□ -0.96
MSH5O43196 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
MSH5O43196 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
MSH5O43196 RNA5SP435-201ENST00000364044 108 ntBASIC9.07□□□□□ -0.96
MSH5O43196 Y_RNA.205-201ENST00000364128 113 ntBASIC9.07□□□□□ -0.96
MSH5O43196 RNU1-74P-201ENST00000384108 171 ntBASIC9.07□□□□□ -0.96
MSH5O43196 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC9.07□□□□□ -0.96
MSH5O43196 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC9.07□□□□□ -0.96
MSH5O43196 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC9.07□□□□□ -0.96
MSH5O43196 AL034399.1-201ENST00000451535 380 ntBASIC9.07□□□□□ -0.96
MSH5O43196 RNA5SP154-201ENST00000516193 111 ntBASIC9.07□□□□□ -0.96
MSH5O43196 SNORA31.19-201ENST00000517079 126 ntBASIC9.07□□□□□ -0.96
MSH5O43196 RN7SL230P-201ENST00000580835 303 ntBASIC9.07□□□□□ -0.96
MSH5O43196 AC131238.1-201ENST00000617135 328 ntBASIC9.07□□□□□ -0.96
MSH5O43196 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
MSH5O43196 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC9.07□□□□□ -0.96
MSH5O43196 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC9.07□□□□□ -0.96
MSH5O43196 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms